PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04533.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 858aa MW: 95078.8 Da PI: 5.5705

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04533.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3.2e-28	498	548	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl +l+++Fs+++kdAA+++gvc+T+LKriCRq+GI+RWP+Rki+++ Rsa1.0_04533.1_g00003.1 498 EKNVSLRVLQQHFSGSLKDAARSIGVCPTTLKRICRQHGIMRWPSRKINKV 548 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.199	484	568	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-26	500	548	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.48E-23	670	763	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-22	674	756	No hit	No description
SMART	SM00666	2.2E-23	677	759	IPR000270	PB1 domain
PROSITE profile	PS51745	21.181	677	759	IPR000270	PB1 domain
Pfam	PF00564	1.3E-17	678	758	IPR000270	PB1 domain
CDD	cd06407	3.51E-37	678	758	No hit	No description
SuperFamily	SSF57095	6.92E-7	779	844	IPR003614	Knottin, scorpion toxin-like
Gene3D	G3DSA:3.30.30.10	4.8E-9	780	845	IPR003614	Knottin, scorpion toxin-like
Pfam	PF00537	9.6E-5	787	844	IPR002061	Scorpion long chain toxin/defensin

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006952	Biological Process	defense response
GO:0005576	Cellular Component	extracellular region
GO:0005515	Molecular Function	protein binding
GO:0008200	Molecular Function	ion channel inhibitor activity

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence Send to blast
MEHPFASREN GFSYQEQKDG LSFGSGVWSF ISDDMLNSSE LMNLNSFATW CDSPYETDTS 60 LVAQYGLTTS QTGLTRSFNG LESSYYGGDM SYSLDSDELS GKRRSVLNCT IPRSLSHSLD 120 EKMLKALSLF MQFSGSGEGV LAQVWSPVKT GDKYMLSTCD QAYLLDPRLS QYREVSRKFT 180 FASQPNQSSF PGLPGRVFIS GVREWTSNVM YYKKDEYLRV KHAMDNEVRG SIAIPILEAS 240 SGASCFAVME IITSHEKVNF DTEMDSVCRA LQAVNLRTSV VPRPQYLSSN QREALAEIQD 300 VLRALCHAHK LPLALTWIPN SGENNRVLCV EETACYVNDM EMEGFVHACL DHPLREKEGI 360 VGKAFVSNQP FFSSDVKAYD ISEYPLVHHA RKYGLSAAVA VKLRSTHTGE DDYILELFLP 420 LSMKGSLEQQ LLLDSLSDTM QRVCRTLRTV SDDVGETNST ASMFSDKSSD KESTGSQGTC 480 EQNMSKAITP EKKKGTVEKN VSLRVLQQHF SGSLKDAARS IGVCPTTLKR ICRQHGIMRW 540 PSRKINKVNR SLRKIQTVLD SVHGVEGGLR FDSATGVFVS VGSSNNGNNA HVRVQEDMAK 600 DTSLCELLKA KSVDNAIKLE DDIITNGSFM EVNANRSNSD SSNGSGAAML RSSSPSMDNR 660 NQMRTQKGNS SESGSSTLTV KATYREDTTR FKFEPSVGCL QLYREVGKRF RLQDGSFQLK 720 YLDDEEEWVM LVTDSDLQEC LEILYGMGKH TVKFLVRDLP SHIGSSAGSN GYLGAEVPEI 780 EGQLCMREYV GDFPLSNCSA VETPLCHTKC RENGAEGGIC YVAVEGEDEQ RVESYKCLCN 840 FCSETFCHDT PGPSQTLG

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence Send to blast

MEHPFASREN GFSYQEQKDG LSFGSGVWSF ISDDMLNSSE LMNLNSFATW CDSPYETDTS  60
LVAQYGLTTS QTGLTRSFNG LESSYYGGDM SYSLDSDELS GKRRSVLNCT IPRSLSHSLD  120
EKMLKALSLF MQFSGSGEGV LAQVWSPVKT GDKYMLSTCD QAYLLDPRLS QYREVSRKFT  180
FASQPNQSSF PGLPGRVFIS GVREWTSNVM YYKKDEYLRV KHAMDNEVRG SIAIPILEAS  240
SGASCFAVME IITSHEKVNF DTEMDSVCRA LQAVNLRTSV VPRPQYLSSN QREALAEIQD  300
VLRALCHAHK LPLALTWIPN SGENNRVLCV EETACYVNDM EMEGFVHACL DHPLREKEGI  360
VGKAFVSNQP FFSSDVKAYD ISEYPLVHHA RKYGLSAAVA VKLRSTHTGE DDYILELFLP  420
LSMKGSLEQQ LLLDSLSDTM QRVCRTLRTV SDDVGETNST ASMFSDKSSD KESTGSQGTC  480
EQNMSKAITP EKKKGTVEKN VSLRVLQQHF SGSLKDAARS IGVCPTTLKR ICRQHGIMRW  540
PSRKINKVNR SLRKIQTVLD SVHGVEGGLR FDSATGVFVS VGSSNNGNNA HVRVQEDMAK  600
DTSLCELLKA KSVDNAIKLE DDIITNGSFM EVNANRSNSD SSNGSGAAML RSSSPSMDNR  660
NQMRTQKGNS SESGSSTLTV KATYREDTTR FKFEPSVGCL QLYREVGKRF RLQDGSFQLK  720
YLDDEEEWVM LVTDSDLQEC LEILYGMGKH TVKFLVRDLP SHIGSSAGSN GYLGAEVPEI  780
EGQLCMREYV GDFPLSNCSA VETPLCHTKC RENGAEGGIC YVAVEGEDEQ RVESYKCLCN  840
FCSETFCHDT PGPSQTLG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04533.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477361.1	0.0	PREDICTED: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A078GV58	0.0	A0A078GV58_BRANA; BnaA04g25110D protein
STRING	Bra037711.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]