PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04490.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 25341 Da PI: 4.8042 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+ G g+W+++a + g++R++k+c++rw +yl Rsa1.0_04490.1_g00001.1 31 KGPWTPEEDKLLTEYVASSGEGRWSSVATCAGLNRSGKSCRLRWVNYL 78 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 25 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.841 | 26 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-16 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-17 | 31 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.7E-21 | 32 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.12E-12 | 33 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-7 | 82 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MLDWKVDQVH QRNHDHEPYQ KPQQQLQGCR KGPWTPEEDK LLTEYVASSG EGRWSSVATC 60 AGLNRSGKSC RLRWVNYLRP GLKRGQITPE EEGIILELHS LWGLQPQPQN QRSQLVSQDH 120 MNLDNEQNIA SSFSYPLIVI NDQFHMPQSV TATSSDYSMI DECNLWGSLW SLHDEDLQSN 180 GGDWEQRPAA DIAEKFNGGR IEAPPCGSGE YNYNGFYTGG YIL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04490.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371980 | 1e-87 | AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds. | |||
GenBank | AY519593 | 1e-87 | AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619948.1 | 1e-133 | PREDICTED: myb-related protein 340-like | ||||
TrEMBL | A0A3P6DHJ5 | 1e-132 | A0A3P6DHJ5_BRAOL; Uncharacterized protein | ||||
STRING | Bra020744.1-P | 1e-108 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 5e-99 | myb domain protein 121 |