PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04489.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 356aa MW: 41021.9 Da PI: 5.4232

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04489.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.1	6.1e-20	33	80	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g+l++++ Rsa1.0_04489.1_g00005.1 33 SSSYSLAATSLNSRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 80 799********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.349	41	83	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-13	44	114	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-10	45	79	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
RESCFENQTR KGTNHATTSF FLLFFQFVSF FPSSSYSLAA TSLNSRLLTI FKKAQELTTL 60 CDIEACVIHY GPDGELRTWP ENRDKVTDLA LRYIQLDEAK RRKKSLNLYE FLNKIKKTTK 120 TTNNFKKRAK KKNVEELKYP VSDHYSVDQI NQIIHSLELS YSTLQERRRF LAAKKQNESL 180 NPSQLTPLPQ ESGLTNQELC VYDQNNNNNF QHLCVSDNSA AQESGLHYQL MPYDQNMFVG 240 NNFKDPCVSS NTQDYSVFPL ELQESVSNYG LNQLMQHELY GFDQNMCMSD ITNNFNVVDP 300 FLSNMLPDDF CFDFQDTSGG NMVGNPSFSQ VFNLDMSSSY VYENRLLLQE STLPSL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

RESCFENQTR KGTNHATTSF FLLFFQFVSF FPSSSYSLAA TSLNSRLLTI FKKAQELTTL  60
CDIEACVIHY GPDGELRTWP ENRDKVTDLA LRYIQLDEAK RRKKSLNLYE FLNKIKKTTK  120
TTNNFKKRAK KKNVEELKYP VSDHYSVDQI NQIIHSLELS YSTLQERRRF LAAKKQNESL  180
NPSQLTPLPQ ESGLTNQELC VYDQNNNNNF QHLCVSDNSA AQESGLHYQL MPYDQNMFVG  240
NNFKDPCVSS NTQDYSVFPL ELQESVSNYG LNQLMQHELY GFDQNMCMSD ITNNFNVVDP  300
FLSNMLPDDF CFDFQDTSGG NMVGNPSFSQ VFNLDMSSSY VYENRLLLQE STLPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04489.1_g00005.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018479649.1	0.0	PREDICTED: agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	2e-67	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	A0A078I552	1e-159	A0A078I552_BRANA; BnaA04g09910D protein
STRING	Bra025609.1-P	1e-157	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	2e-66	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]