PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04489.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 135aa MW: 15461.1 Da PI: 10.8164 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 38.2 | 3.7e-12 | 7 | 101 | 1 | 97 |
HHHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS HSF_DNA-bind 1 aFlkklyeiledeelkelisws.engnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 +F +ly+i++d++ + +isws ++ n fvv+d +++ +++L k + +n + F+ L gF++v + ++ eF Rsa1.0_04489.1_g00003.1 7 TFYVQLYNIVDDPSSDPIISWSkSSPNGFVVWDLKTLRRDILMKsssgVLLGRNSTEFISNLRSHGFRSVLKGFGE-------LEF 85 5899******************6666****************88666678899*********************99.......*** PP EESXXXXXXXXXXXXX CS HSF_DNA-bind 82 khksFkkgkkelleki 97 +h F++g ++ +k+ Rsa1.0_04489.1_g00003.1 86 EHVDFTRGFVTKKKKM 101 ****999876655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.3E-7 | 4 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.8E-13 | 5 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-10 | 5 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.4E-9 | 8 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MIRKLSTFYV QLYNIVDDPS SDPIISWSKS SPNGFVVWDL KTLRRDILMK SSSGVLLGRN 60 STEFISNLRS HGFRSVLKGF GELEFEHVDF TRGFVTKKKK MVKALSERFD AQIKAIKCRF 120 KAKNLKVDLI ISSPK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04489.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479658.1 | 2e-73 | PREDICTED: heat shock factor protein HSF8-like | ||||
TrEMBL | A0A078HEM5 | 1e-64 | A0A078HEM5_BRANA; BnaC04g32080D protein | ||||
STRING | Bra025611.1-P | 2e-62 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 2e-11 | Winged helix-turn-helix transcription repressor DNA-binding |