PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04384.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 401aa MW: 44429.9 Da PI: 8.2653 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.7 | 6.1e-11 | 43 | 68 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f++rtG C yG++C+++H+ Rsa1.0_04384.1_g00003.1 43 PGERDCQFYLRTGLCGYGSSCRYNHP 68 5789*********************9 PP | |||||||
2 | zf-CCCH | 36.6 | 7.5e-12 | 87 | 111 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tG CkyG++Ck++H++ Rsa1.0_04384.1_g00003.1 87 QPDCEYYLKTGACKYGSTCKYHHPK 111 789********************96 PP | |||||||
3 | zf-CCCH | 38.5 | 1.9e-12 | 131 | 156 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtGtC++G CkF+H++ Rsa1.0_04384.1_g00003.1 131 GEKPCQYYLRTGTCRFGVACKFHHPQ 156 689*********************97 PP | |||||||
4 | zf-CCCH | 26.6 | 1e-08 | 263 | 283 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Crff+ tGtCkyG+ Ck+ H Rsa1.0_04384.1_g00003.1 263 QCRFFMNTGTCKYGEHCKYTH 283 5******************88 PP | |||||||
5 | zf-CCCH | 27.1 | 7.5e-09 | 307 | 332 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f +G+Ck+G++C+F H+ Rsa1.0_04384.1_g00003.1 307 PGQPACASFKSYGICKFGPNCNFDHS 332 57899********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.361 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 44 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-6 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 48 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 84 | 112 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 87 | 111 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 89 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 90 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-7 | 128 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.741 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-6 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-10 | 131 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-6 | 133 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 258 | 286 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 258 | 285 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 261 | 283 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-7 | 262 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 264 | 283 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 302 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.972 | 306 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-4 | 306 | 333 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-7 | 308 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 312 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MSDTHNVQSS TGSIRSSQKI EDAFRKMKVN NENGESDPYP DRPGERDCQF YLRTGLCGYG 60 SSCRYNHPTN LPQVMYYNEE LPERIGQPDC EYYLKTGACK YGSTCKYHHP KDRNGAEPIL 120 FNVLNLPMRQ GEKPCQYYLR TGTCRFGVAC KFHHPQPDNG HSTAAYPMST FPSPGLHHAG 180 GLAMMSAYGT LPRPQLTQTY VPVMVTPSQG LLPPQSWATY MGASNNSIYG VKNQVYYSGS 240 SGPMPMAVAL NGDLSERSEQ QQQCRFFMNT GTCKYGEHCK YTHLGVRVSP PQPLPNFINP 300 FVLPARPGQP ACASFKSYGI CKFGPNCNFD HSVLPYPPTG LPMPSSLPSP YPSHVSSNYQ 360 RISPSPSRTG SKAMHDDKPG VKKKMSGTET QDDDSEQVHD S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04384.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018440907.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q94AD9 | 0.0 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A078IVE1 | 0.0 | A0A078IVE1_BRANA; BnaAnng12470D protein | ||||
STRING | Bo5g005120.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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