PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04353.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 299aa MW: 34002 Da PI: 9.7533 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.5 | 2.4e-18 | 19 | 111 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 ffkvl ++d +++ + +p +f+++++ + e s++++l+ ++g sW++kl +k+++ y+ ++GW +F ++ngL + + ++F++ Rsa1.0_04353.1_g00002.1 19 FFKVLRKEDLSSQTMREIPQEFLKSISAN-EFSFKMVLKLPWGSSWRIKL--SKSQSFfyYMEKNGWDQFLSDNGLGDDELLTFTH 101 99************************877.699*****************..888777878888********************** PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 +g+++f +v++ Rsa1.0_04353.1_g00002.1 102 KGNMCF--NVTI 111 ******..6555 PP | |||||||
2 | B3 | 53.3 | 5.1e-17 | 211 | 288 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++s+vl +g +pk+fae+h+ e++ t+ d++g +sWev + ++k ++ +++GW + vk+ gL++gD+++F+l++ Rsa1.0_04353.1_g00002.1 211 TIKKSYVLFLG---IPKRFAERHMP--MEETVFTIHDSKGkKSWEVMYVVSKIQS--RFSRGWPRLVKDFGLEVGDVCTFQLIKP 288 55667777665...*********73..345678999988879******5555555..599*********************9873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-20 | 14 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.25E-19 | 17 | 112 | No hit | No description |
SMART | SM01019 | 4.7E-20 | 19 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.042 | 19 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-16 | 19 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-20 | 202 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-21 | 202 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.816 | 205 | 299 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.79E-18 | 206 | 289 | No hit | No description |
SMART | SM01019 | 2.3E-16 | 208 | 299 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-15 | 211 | 288 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGTNSCFGMI MEEGNNPGFF KVLRKEDLSS QTMREIPQEF LKSISANEFS FKMVLKLPWG 60 SSWRIKLSKS QSFFYYMEKN GWDQFLSDNG LGDDELLTFT HKGNMCFNVT IYQINCLEML 120 GPTRSATIAS SSGNKREQGR ESLSASSYPV SETAESTVGG RLRKKRELIN LGKKQVKEAE 180 KSNKSKKRKM DTNSDDSEAG TSSHVPEFTL TIKKSYVLFL GIPKRFAERH MPMEETVFTI 240 HDSKGKKSWE VMYVVSKIQS RFSRGWPRLV KDFGLEVGDV CTFQLIKPTE MILSVSNSM |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00517 | DAP | Transfer from AT5G18090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04353.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444661.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g18090 | ||||
Swissprot | Q9FK61 | 1e-111 | Y5809_ARATH; B3 domain-containing protein At5g18090 | ||||
TrEMBL | A0A078HJ49 | 0.0 | A0A078HJ49_BRANA; BnaA10g16730D protein | ||||
STRING | Bra002132.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 1e-113 | B3 family protein |
Publications ? help Back to Top | |||
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