PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_04287.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 555aa MW: 59918.1 Da PI: 5.7202

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_04287.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.4e-30	234	293	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+ Rsa1.0_04287.1_g00003.1 234 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 293 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	219	295	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-27	227	295	IPR003657	WRKY domain
PROSITE profile	PS50811	28.69	229	295	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	234	294	IPR003657	WRKY domain
Pfam	PF03106	6.8E-27	235	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MEVILKSPTS GSLLKDKVIG SAQIHEATKV EEDHQELESA KVEMSEVKEE NEKLKGMLER 60 IESDYKSLKL RFFDIIQQEP SNNQTQDQNM VDLPTATTDL SSLDQERELV SLSLGRRSSS 120 PNDNTSRKEE KTDAISKEVN ADEELTKAGL TLGFNNGSGR EPDGGLSVPN QANSSVENSS 180 EDVPGETWPP SKVTGKRSSP EPASGGDVDG DAGQQNPVKR ARVCVRARCD TPTMNDGCQW 240 RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCAEDMS ILITTYEGTH SHPLPLSATT 300 MASTTSAAAS MLLSGSSSSS SAAEIMGNNL YDNSRFINNN NSKSFYSPTL HSPLHPTVTL 360 DLTAPQHSSS SLPSLNFNKF PNSFQRFPSA SLNFSSNSSS LNSSILNLPA TWGNGYSSYT 420 PYPYNNVQFG TSNQVKTVQN NQSLTETLTK ALTSDPSFQS VIAAAISSMV GSNGEQQIVG 480 PRHPISDNVL RTAAMDNNKG RGGYFSSLLM SNTIANNQTG ASLDQTSSQP PPLSMFNNSS 540 SSPSTTSFVN KEEKS

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MEVILKSPTS GSLLKDKVIG SAQIHEATKV EEDHQELESA KVEMSEVKEE NEKLKGMLER  60
IESDYKSLKL RFFDIIQQEP SNNQTQDQNM VDLPTATTDL SSLDQERELV SLSLGRRSSS  120
PNDNTSRKEE KTDAISKEVN ADEELTKAGL TLGFNNGSGR EPDGGLSVPN QANSSVENSS  180
EDVPGETWPP SKVTGKRSSP EPASGGDVDG DAGQQNPVKR ARVCVRARCD TPTMNDGCQW  240
RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCAEDMS ILITTYEGTH SHPLPLSATT  300
MASTTSAAAS MLLSGSSSSS SAAEIMGNNL YDNSRFINNN NSKSFYSPTL HSPLHPTVTL  360
DLTAPQHSSS SLPSLNFNKF PNSFQRFPSA SLNFSSNSSS LNSSILNLPA TWGNGYSSYT  420
PYPYNNVQFG TSNQVKTVQN NQSLTETLTK ALTSDPSFQS VIAAAISSMV GSNGEQQIVG  480
PRHPISDNVL RTAAMDNNKG RGGYFSSLLM SNTIANNQTG ASLDQTSSQP PPLSMFNNSS  540
SSPSTTSFVN KEEKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	221	295	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_04287.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430078	0.0	KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444851.1	0.0	PREDICTED: probable WRKY transcription factor 72
Swissprot	Q9LXG8	0.0	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	A0A3P6E7H0	0.0	A0A3P6E7H0_BRAOL; Uncharacterized protein
STRING	Bo9g165380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	0.0	WRKY DNA-binding protein 72