PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04200.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 137aa MW: 16197.6 Da PI: 10.8085 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 46.7 | 8.8e-15 | 12 | 98 | 2 | 97 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 F + lyei++d++ + +isws ++++sfvv+d eef k++Lpk ++ +nf+ Fv L F+++ + eF h++F Rsa1.0_04200.1_g00003.1 12 FFTDLYEIVNDHSSDAIISWSnNSNSSFVVWDVEEFCKRILPKsVWFGRNFSEFVSELRYHRFQRIGR-----------FEFGHENFA 88 999******************666799**************87578899**********999998865...........579999999 PP XXXXXXXXXX CS HSF_DNA-bind 88 kgkkelleki 97 +g+ ll+++ Rsa1.0_04200.1_g00003.1 89 RGRPWLLKRM 98 9998888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.4E-19 | 7 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-16 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.61E-20 | 9 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-16 | 12 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MVHRIATGSN SFFTDLYEIV NDHSSDAIIS WSNNSNSSFV VWDVEEFCKR ILPKSVWFGR 60 NFSEFVSELR YHRFQRIGRF EFGHENFARG RPWLLKRMVP SKTLDDEFRA KLKAKRDKAK 120 AKKARAKVVR LLENLQI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 123 | KAKAKKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_04200.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479723.1 | 3e-97 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | M4ENH1 | 3e-53 | M4ENH1_BRARP; Uncharacterized protein | ||||
STRING | Bra030341.1-P | 5e-54 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 4e-16 | Winged helix-turn-helix transcription repressor DNA-binding |