PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04195.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 81aa    MW: 9317.78 Da    PI: 10.5131
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04195.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF103.29e-332272151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Rsa1.0_04195.1_g00003.1 22 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 72
                             79***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-411473IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.1791474IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-301574IPR002100Transcription factor, MADS-box
CDDcd002655.40E-401575No hitNo description
PROSITE patternPS0035001670IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-341636IPR002100Transcription factor, MADS-box
PfamPF003198.7E-282370IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-343651IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-345172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MELGGDSSPR RKTAGRGKIE IKRIENTTNR QVTFCKRRNG LLKKAYELSV LCDAEVALIV  60
FSSRGRLYEY SNNRFLLMPY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-211581270Myocyte-specific enhancer factor 2B
1tqe_Q8e-211581270Myocyte-specific enhancer factor 2B
1tqe_R8e-211581270Myocyte-specific enhancer factor 2B
1tqe_S8e-211581270Myocyte-specific enhancer factor 2B
6c9l_A8e-211581270Myocyte-specific enhancer factor 2B
6c9l_B8e-211581270Myocyte-specific enhancer factor 2B
6c9l_C8e-211581270Myocyte-specific enhancer factor 2B
6c9l_D8e-211581270Myocyte-specific enhancer factor 2B
6c9l_E8e-211581270Myocyte-specific enhancer factor 2B
6c9l_F8e-211581270Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04195.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325081e-91AC232508.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB060L22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450192.15e-45PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_018450193.15e-45PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_018450194.15e-45PREDICTED: floral homeotic protein AGAMOUS-like isoform X3
RefseqXP_018450196.15e-45PREDICTED: floral homeotic protein AGAMOUS-like isoform X4
RefseqXP_018450197.15e-45PREDICTED: floral homeotic protein AGAMOUS-like isoform X5
RefseqXP_018450198.14e-45PREDICTED: floral homeotic protein AGAMOUS-like isoform X6
SwissprotQ015405e-43AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBLA0A0D3BKE53e-50A0A0D3BKE5_BRAOL; Uncharacterized protein
STRINGBo3g157470.15e-51(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-44MIKC_MADS family protein