PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04110.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LSD
Protein Properties Length: 133aa    MW: 13747.1 Da    PI: 7.5974
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04110.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.46.6e-153862125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             C+gCr+lL+YP GA+sV+Ca+C++V
  Rsa1.0_04110.1_g00003.1 38 CSGCRNLLMYPVGATSVCCAVCNAV 62
                             ************************9 PP
2zf-LSD1451.8e-1477100225
                  zf-LSD1   2 ggCrtlLsYPrGApsVRCalCdtV 25 
                              ggC+tlL+Y rGA+sV+C++C+tV
  Rsa1.0_04110.1_g00003.1  77 GGCHTLLMYIRGATSVQCSCCHTV 100
                              8**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.2E-143565IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-113862IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-1277102IPR005735Zinc finger, LSD1-type
PfamPF069435.1E-1277100IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MPVPLAPYPT PPASALPPSY TPPLPVNGST GGQSQLVCSG CRNLLMYPVG ATSVCCAVCN  60
AVTAVPPPGT EMAQLVGGCH TLLMYIRGAT SVQCSCCHTV NLALEVTCIY TNLDPSGNIV  120
KNTIANHYKV LLS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04110.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1932951e-113AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486322.12e-68PREDICTED: protein LOL1-like isoform X1
SwissprotQ93ZB12e-49LOL1_ARATH; Protein LOL1
TrEMBLA0A3P6FCG52e-61A0A3P6FCG5_BRAOL; Uncharacterized protein
STRINGBo5g087050.18e-62(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-36lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]