PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04028.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 219aa    MW: 24238.9 Da    PI: 6.7978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04028.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.8e-2069118356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa a+++a+ +++g+
  Rsa1.0_04028.1_g00005.1  69 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAALAYDKAAFEFRGH 118
                              9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.6E-1568118IPR001471AP2/ERF domain
PROSITE profilePS5103224.97468125IPR001471AP2/ERF domain
SMARTSM003801.1E-3868131IPR001471AP2/ERF domain
CDDcd000183.42E-2568127No hitNo description
Gene3DG3DSA:3.30.730.103.1E-3368126IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2368126IPR016177DNA-binding domain
PRINTSPR003679.8E-126980IPR001471AP2/ERF domain
PRINTSPR003679.8E-1291107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MHSGKRPLSP ESMAGKTEEK EELGSCSTLS ESDVSAFVSE LTDQPTPPSI NQSSSLTPQE  60
QSNARQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT AEAAALAYDK AAFEFRGHKA  120
KLNFPEHILS NSTRPYPSTD TSHDRITVMP PPSIAPDILL DRYGQFDSAN IDSVANFSMN  180
MSSSSSSLNQ QEHIPKVEDA SMTGSEVKGL KRINHRCKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2564125163ATERF1
3gcc_A2e-2564125163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04028.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892921e-81AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436341.11e-136PREDICTED: ethylene-responsive transcription factor ERF112-like
SwissprotP930072e-86EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A3P5ZCD51e-126A0A3P5ZCD5_BRACM; Uncharacterized protein
STRINGBo4g043530.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-79ERF family protein