PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03967.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 668aa    MW: 75084.2 Da    PI: 6.9414
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03967.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.85.6e-1152946631374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  
  Rsa1.0_03967.1_g00001.1 294 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLA 376
                              689***************************************************************9999...999********** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ k+s++++N++I + v ++ rvH+iDf+i +G+QWp+L++ ++    g+p++R+Tg++ p++g   ++++eetg+rLa +A+
  Rsa1.0_03967.1_g00001.1 377 CCPFRKLSYFITNKTIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGKPKVRVTGIEFPQPGfrPAQRVEETGQRLAAYAK 460
                              ***********************************************8..8***************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              ++gvpfe+++ +ak++++++le+L+++++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++r
  Rsa1.0_03967.1_g00001.1 461 QFGVPFEYKA-IAKKWDAVQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKINPDLFVFGIVNGAYNAPFFVTR 545
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal ++s++fd+le+ +pre+eer+++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+  + ++
  Rsa1.0_03967.1_g00001.1 546 FREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPDIMKTSLHKVN 631
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              k++ + + +++++ +l++gWk+r+++++S+W+
  Rsa1.0_03967.1_g00001.1 632 KFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 663
                              ***889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.519268643IPR005202Transcription factor GRAS
PfamPF035142.0E-112294663IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MITDPSPVDL TRLPDQPSSL TLFDGYNYNH HHPLSNNNQN AFATMTSSEE DPADEFDFSD  60
AVLGYISQIL MEEDMDDRVC MLQESLDLEA AERSLYEAIG KKYPPSPERS SPPYVENLDH  120
VVPAGDRTGF GGGIRPASGG GGGFTLDFRN PQSRCSPVLS VPQSPYGNNR DDQSVWLFRR  180
GVEEEDGERN EMVVNFKVKR NPNRCAGGDE EERCSKLPAV FSETILKSDV VDKILVHVPG  240
EESMKEFDAL REVLKKGVGK KKASAPQEGK RRARGRGRGR GGGGGGVKKE VVDLRSLLIH  300
CAQAVAADDS RCAGQLLKQI RQHSTPFGDG NQRLAHCFAN GLEARLAGTG SQIYKGIVSK  360
PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSP RVHVIDFGIL YGFQWPTLIH  420
RFSIYGKPKV RVTGIEFPQP GFRPAQRVEE TGQRLAAYAK QFGVPFEYKA IAKKWDAVQL  480
EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDAVLSLI GKINPDLFVF GIVNGAYNAP  540
FFVTRFREAL FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET  600
YKQWHVRAMR SGLVQVPFDP DIMKTSLHKV NKFYHKDFVI DQDNRWLLQG WKGRTVMALS  660
VWKPESKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4330066625382Protein SCARECROW
5b3h_A1e-4330066624381Protein SCARECROW
5b3h_D1e-4330066624381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271280RARGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03967.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472836.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_018472840.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0D3B5G30.0A0A0D3B5G3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AC640.0A0A3P6AC64_BRAOL; Uncharacterized protein
STRINGBo3g031890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein