PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_03930.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 305aa MW: 35099.2 Da PI: 4.8999 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.6 | 1e-20 | 11 | 58 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++s + +++ +R+ +i+KKA+EL +LCd+e++vi ++++g+l++++ Rsa1.0_03930.1_g00002.1 11 HSSYSLAATSLNNRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 58 58999******************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0022 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.489 | 19 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-11 | 19 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-14 | 20 | 93 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MRPPRCSNSS HSSYSLAATS LNNRLLTIFK KAQELTTLCD IEACVIHYGP DGELRTWPEN 60 RDKVRDLALR YIQLDEAKRR KKSLNLYEFL NKNKKTTKMT NNFKKKNAEE LKYPISDHYS 120 VDQINQLIQS LELSYFTLQE RRRFLAAKKQ NESLNPSQLT PLPQESGLTN QELCVYDQNN 180 NNNFQNLCVS AAQESGLHYQ LMPYGGGYYD QNMFVGNNYQ DPCVSSNTQD YSVFPLELQE 240 SLSNYGLNQL MPQELYGLDQ NMCMGDTINI NNNAQDPCLS DDFCFDFQDP YSGFMVGNPS 300 FSQDF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_03930.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479650.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 7e-69 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | A0A3N6SM46 | 1e-150 | A0A3N6SM46_BRACR; Uncharacterized protein | ||||
STRING | Bo4g139560.1 | 1e-150 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41200.1 | 9e-65 | AGAMOUS-like 75 |
Publications ? help Back to Top | |||
---|---|---|---|
|