PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03869.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 118aa MW: 13304.2 Da PI: 5.8868 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.7e-05 | 13 | 53 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R d++ ++ + L++l+ + +K + a++L +A++YI+ Lq Rsa1.0_03869.1_g00001.1 13 KERKDKVGERVSALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 53 567788888999999999998.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-9 | 3 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.338 | 3 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-12 | 11 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0043 | 11 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.08E-6 | 13 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MKRHKSDLSF SSKERKDKVG ERVSALQQLV SPYGKTDTAS VLLEAMQYIQ FLQEQVKVLS 60 APYLQTSPTI TQEELEEYSL RSRGLCLVQM EYTLGIAQSN GADIWAPVKT PTYPAFDV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03869.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ576041 | 2e-85 | AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene). | |||
GenBank | BT010911 | 2e-85 | BT010911.1 Arabidopsis thaliana At2g31730 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474658.1 | 5e-82 | PREDICTED: transcription factor bHLH113-like | ||||
Swissprot | Q7XJU2 | 2e-70 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0D3B4G3 | 2e-77 | A0A0D3B4G3_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g026410.1 | 4e-78 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 7e-73 | bHLH family protein |
Publications ? help Back to Top | |||
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