PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03826.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 228aa    MW: 26115.7 Da    PI: 8.7224
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03826.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.7e-342377155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             kprlrWt eLHerFv+av++LGG++kAtPkti+++m vkgLtl+h+kSHLQk+Rl
  Rsa1.0_03826.1_g00004.1 23 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRVMAVKGLTLYHLKSHLQKFRL 77
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-322078IPR009057Homeodomain-like
PROSITE profilePS5129411.9652080IPR017930Myb domain
SuperFamilySSF466896.63E-172278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-242378IPR006447Myb domain, plants
PfamPF002499.8E-72575IPR001005SANT/Myb domain
PfamPF143792.3E-14122162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMQSREERRA ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDKAT PKTIMRVMAV  60
KGLTLYHLKS HLQKFRLGKQ PHKEHSHGHS INIRDSNKAS MLDLQRNVVF TTPHIIGRNM  120
NEMQMEVKRR IAEEVEVERQ VNQRIEAQGK YMESMLEKAC ETQEASLTKD YSTLFFNNTS  180
PLPIIWFEDH FPSSSSLDST LNLSDINPNF SLQDSLSSIT KNRTVCLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00351DAPTransfer from AT3G12730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03826.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0707641e-165AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds.
GenBankAY1439161e-165AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489034.11e-170PREDICTED: myb family transcription factor PHL12
SwissprotQ8VYI21e-143PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A397ZHR31e-156A0A397ZHR3_BRACM; Uncharacterized protein
STRINGBra039340.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137451726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-133G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]