PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03799.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C3H

Protein Properties

Length: 411aa MW: 44719.6 Da PI: 9.4222

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03799.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	361	386	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+ff ++ Ck G++C + H+p Rsa1.0_03799.1_g00004.1 361 GQRPCMFFGKGKGCKLGESCLYLHDP 386 789*****99**********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.676	359	387	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MGRNVKKARV SWPSDSMLCQ VKMFQKEDYP AKVGAQTCSK SKASKDLHHG TVYSTRPPNI 60 PLITWKPPPK FILSDHWLVA SGEESTETGS ENLRIAKVLE AFYPHHSLIP PTRPSISPAA 120 VQVDDTITPT IRLTPIEEDE DEQPESPAIQ SSQSSKTPPS QFGHGPDMTL AALLNTKEQG 180 SPVDADLLVK FLTDPIIINN LLNAAAAKPL LETGNNNNTT KPPPQHVTTS SANSPPGNGV 240 TPVLAAHLVL NTYPLSCARK PLPRVEESLE PSSVVVSEPQ NQSSPTSGTW NMSRVLESAG 300 TVTDTQSAYQ MNITRDDYFK NLIREHGGVV APATNKYKRR VANNNNNNNN DEKKALAKGK 360 GQRPCMFFGK GKGCKLGESC LYLHDPSKRL STYDVAGAAA APRAKRLKFR T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MGRNVKKARV SWPSDSMLCQ VKMFQKEDYP AKVGAQTCSK SKASKDLHHG TVYSTRPPNI  60
PLITWKPPPK FILSDHWLVA SGEESTETGS ENLRIAKVLE AFYPHHSLIP PTRPSISPAA  120
VQVDDTITPT IRLTPIEEDE DEQPESPAIQ SSQSSKTPPS QFGHGPDMTL AALLNTKEQG  180
SPVDADLLVK FLTDPIIINN LLNAAAAKPL LETGNNNNTT KPPPQHVTTS SANSPPGNGV  240
TPVLAAHLVL NTYPLSCARK PLPRVEESLE PSSVVVSEPQ NQSSPTSGTW NMSRVLESAG  300
TVTDTQSAYQ MNITRDDYFK NLIREHGGVV APATNKYKRR VANNNNNNNN DEKKALAKGK  360
GQRPCMFFGK GKGCKLGESC LYLHDPSKRL STYDVAGAAA APRAKRLKFR T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03799.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018440744.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 68 isoform X3
Swissprot	Q9FH61	7e-88	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	A0A078I2Y0	0.0	A0A078I2Y0_BRANA; BnaA07g12650D protein
TrEMBL	A0A3P6BRH0	0.0	A0A3P6BRH0_BRACM; Uncharacterized protein
STRING	Bo7g064980.1	1e-123	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12