PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03784.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 285aa    MW: 32460.5 Da    PI: 5.7509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03784.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.6e-50101521129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                              lppGfrFhP+deelv++yL++k+++k          +            + e+d++ +ePw+Lp  +k + kewyfFs rd+kyat
  Rsa1.0_03784.1_g00001.1  10 LPPGFRFHPSDEELVCHYLCHKIRAKYdhgdvE---DddagealngatDLVEIDLHVCEPWELPDVAKLNAKEWYFFSFRDRKYAT 92 
                              79**********************999665540...14566777776469**************87788999************** PP

                      NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                              g r+nrat sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Rsa1.0_03784.1_g00001.1  93 GYRTNRATISGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                              ************************967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-568170IPR003441NAC domain
PROSITE profilePS5100553.96710170IPR003441NAC domain
PfamPF023651.1E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCH KIRAKYDHGD VEDDDAGEAL NGATDLVEID  60
LHVCEPWELP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDSSLQDNN  180
NEHQTQRFEV NDAPDLPPPL TLHIIMITCG WEQMMIGSMS SSSSHGPDHE SLLNLLYADN  240
NNTVNITDDN YGQNYGKILL SSDITNLDHY KTCMASSSDG CICGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-451017015168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03784.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382730.0KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468831.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ9S8511e-59NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0D3A3R60.0A0A0D3A3R6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G3290.0A0A3P6G329_BRAOL; Uncharacterized protein
STRINGBo1g017380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-147NAC domain containing protein 74
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]