PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03777.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 434aa    MW: 47878.2 Da    PI: 5.3267
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03777.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.5e-1391114326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               e C f+++tG Ck+G++CkF+H+
  Rsa1.0_03777.1_g00001.1  91 AEDCAFYMKTGSCKFGSTCKFNHP 114
                              689********************9 PP
2zf-CCCH28.91.9e-09145164625
                              -SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                              C++++rtG CkyG +C+F+H
  Rsa1.0_03777.1_g00001.1 145 CKYYFRTGGCKYGLTCRFNH 164
                              ******************** PP
3zf-CCCH35.91.3e-11188211326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              + +C f++r+G Ck+G+ CkF+H+
  Rsa1.0_03777.1_g00001.1 188 EIECLFYMRNGSCKFGADCKFNHP 211
                              568********************9 PP
4zf-CCCH19.71.5e-06334359227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+++++tG Ck+  +Ck++H++
  Rsa1.0_03777.1_g00001.1 334 DQPECSYYLKTGDCKFKFTCKYHHPK 359
                              689*********************96 PP
5zf-CCCH35.61.6e-11380404226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C +++r+G+Ck+G+ C+F H+
  Rsa1.0_03777.1_g00001.1 380 DQVICTHYSRYGICKFGPACRFDHS 404
                              6799********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.5E-788115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.29188116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-688116IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-1091114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-594113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915139167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079140166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5140167IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-7145164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5145165IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-6185212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709185213IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9188211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5189212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4191210IPR000571Zinc finger, CCCH-type
SMARTSM003560.54332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.699332360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981378406IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5378405IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8380404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5380405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4383405IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MIGISGSISD GVETEPVSGS PSDLNQAADV VVLSNEFQNV VLDEVSKDGK KMMSVSEGDG  60
KALEEEVEEE DCVSEEEDES QVLLYPVRPG AEDCAFYMKT GSCKFGSTCK FNHPLPNPSK  120
IQIAKESKVR EKEEDATDKM RLMDCKYYFR TGGCKYGLTC RFNHTKPNSD LPSPPELNFL  180
GLPIRPGEIE CLFYMRNGSC KFGADCKFNH PDPTTLGGTD SPSFHGNTNG GSIGSFSPKN  240
TFQPSSASWS SPRHSNGTAP FIPSMLSQSR GASSQTPEWN GYQATTTMYP SERSVFSTST  300
TYLMNNNNNS AAETSIFTPY KYQKPAEEFP ERPDQPECSY YLKTGDCKFK FTCKYHHPKN  360
RLPKQPPYAL NDKGLPLRPD QVICTHYSRY GICKFGPACR FDHSIQLPDS TGSSHAVVEP  420
PQVGANGNES DGWN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03777.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441572.10.0PREDICTED: zinc finger CCCH domain-containing protein 43
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A397YYD90.0A0A397YYD9_BRACM; Uncharacterized protein
STRINGBo8g076940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]