PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03766.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 1004aa    MW: 111800 Da    PI: 8.2918
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03766.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.22.4e-30195249155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k+r+rWt++LH++F+e+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Rsa1.0_03766.1_g00001.1 195 KTRIRWTQDLHDKFLECVDRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 249
                              68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-16192249IPR009057Homeodomain-like
PROSITE profilePS512949.656192252IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-26194250IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-23195250IPR006447Myb domain, plants
PfamPF002493.1E-7199248IPR001005SANT/Myb domain
PfamPF143791.2E-19278325IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene3DG3DSA:3.80.10.102.5E-30458642IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520585.35E-28459639IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF561123.42E-567711004IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.3E-22785860No hitNo description
PROSITE profilePS5001130.9587971004IPR000719Protein kinase domain
SMARTSM002202.1E-97971003IPR000719Protein kinase domain
PfamPF000692.8E-298001004IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.0E-328611004No hitNo description
PROSITE patternPS001080919931IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1004 aa     Download sequence    Send to blast
MDNINFESSN ASQGSRLQVQ PQQPQPFNLQ DVDKMHYSQT SPWTTEMFSS FTPYDDGIAN  60
QSFSVQCSSS KPYPPSFHPY LYHQSLDPPS LDQPQSMVPV QPIPDQYLKP LSKRSCVNGL  120
PAINASSASY SLCFGASQDP QEACWRNYSN SNVTQLNFSL SHHQPKQTHS RFSSPSFSTC  180
GGSMIRNYGT VTGSKTRIRW TQDLHDKFLE CVDRLGGADK ATPKAILKLM DSEGLTIFHV  240
KSHLQKYRIA KYIPDPREGK FEKRSCSKEL QLDTKTGVQI KEALQLQLDV QRHLHEQLEI  300
QRNLQLRIEE QGKQLKLMIE QQQKTKESLL KSPSVEVSLL PLSASDHSPA PFSLQDAEAM  360
MLTNHELIIA RWLDMFEDVN KSRMRGSATL QYVASLEMTT KHQSRTLAAV IFTVMMLFTL  420
AETYTNPLEV SALEDLYKSL NNPQQLRGWR FEGGGGGDPC REAWMGVYCS GSSIVALQLR  480
GLSLLGSLGN NLHRLHNLKN MDVSFNNLQG DIPFGLPPNA THINMAYNNL TQSLLFSLPL  540
MTSLLSLNLS HNSLSGPLAN VFSGLQIKEM DLSFNNLTGD LPSSFGTLMN LNSLYLQHNR  600
FTGSIIYLAD LPLTDLNIED NQFSGIFPTS FQSIPHLWIW GNKFHVEANY KPWKFPLDVI  660
PMIQNARGYP TTQSSAIMDF PRPQKVRKKK KGLGTGSIVL LVGGLALLGT FFAVIAVRMS  720
HHRRSQKLAA ASQGSNNSTT YSLRVSTDRV PQLRHIPPPP ARTDKASRRN SFSATCHYPA  780
YAKLFSAAEL ELATNSFSDE NLLEEGPLGS VYRAKLPDGQ LAAVRNIPMS SLSLHEEEKF  840
TELLQTASKL RHPNIVTLLG FCIDNGKHLL VYEYAGHLSL YNAMHDDVYK PLSWGFRLHI  900
AIGVARALDY LHSSFSPPIA HSDLKATNIL LDEELTPRIA DCGLASLRPL TSNSVKLRAS  960
EIAIQNTGYI APEHGQPGSS GTKSDTYALG VLLLELLTGR KAFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tl8_A6e-40783100426244BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_D6e-40783100426244BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_G6e-40783100426244BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_H6e-40783100426244BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3uim_A6e-40783100418236BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3ulz_A6e-40783100418236BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
5lpb_A5e-40788100410223Protein BRASSINOSTEROID INSENSITIVE 1
5lpv_A5e-40788100410223Protein BRASSINOSTEROID INSENSITIVE 1
5lpw_A5e-40788100410223Protein BRASSINOSTEROID INSENSITIVE 1
5lpy_A5e-40788100410223Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03766.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472627.10.0PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 2-like
SwissprotQ9FG240.0SRF2_ARATH; Protein STRUBBELIG-RECEPTOR FAMILY 2
TrEMBLM4CNX50.0M4CNX5_BRARP; Uncharacterized protein
STRINGBra005913.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-163G2-like family protein
Publications ? help Back to Top
  1. Diévart A,Clark SE
    Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16
    [PMID:12972053]
  2. Chevalier D, et al.
    STRUBBELIG defines a receptor kinase-mediated signaling pathway regulating organ development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(25): p. 9074-9
    [PMID:15951420]
  3. Eyüboglu B, et al.
    Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.
    BMC Plant Biol., 2007. 7: p. 16
    [PMID:17397538]