PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03738.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 37993.6 Da PI: 7.4066 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.7e-19 | 185 | 235 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+ge Rsa1.0_03738.1_g00005.1 185 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 235 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.42E-34 | 184 | 244 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 185 | 242 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 185 | 243 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-41 | 185 | 248 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-23 | 185 | 243 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-11 | 186 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-14 | 186 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 208 | 224 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MDTSKNKGKS IMSFCTSEVD NHEMEPEEAT DSSGSDMWKP FVGETSSTSQ RSLRKIRTID 60 RHNPYLLSSS YVTHDQPPPT TSLSVSSRVA FPFSLAPPSI QNQQQFSYPC DHPARQMQMI 120 SFGPKRQVQQ QQQQQHMMQY WRDILSPSGR MMMMNMLRQE GNDLPLPLPL QLTRSLIQPF 180 SATKLYRGVR QRHWGKWVAE IRKPRNRTRL WLGTFDTAEE AAMAYDREAF KLRGETARLN 240 FPELFLNKQE STPLHQKESA AEARERGTDH SSVVAAGGVS DETGWSEAWF SAIPEEWGQG 300 SPLWDDYHFP ISFNHNDKEE IMNKNHPDKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 184 | 242 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 184 | 242 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 184 | 242 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03738.1_g00005.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439194.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF053 | ||||
Swissprot | Q9SKT1 | 1e-126 | ERF53_ARATH; Ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | A0A078JQW7 | 1e-146 | A0A078JQW7_BRANA; BnaAnng29660D protein | ||||
TrEMBL | A0A397Y3F8 | 1e-146 | A0A397Y3F8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EQS3 | 1e-146 | M4EQS3_BRARP; Uncharacterized protein | ||||
STRING | Bra031146.1-P | 1e-147 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-127 | ERF family protein |
Publications ? help Back to Top | |||
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