PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03660.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 300aa    MW: 33622.7 Da    PI: 5.2878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03660.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.3e-21153203255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  Rsa1.0_03660.1_g00004.1 153 HYRGVRQRP-WGKYAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 203
                              7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-32153211No hitNo description
PROSITE profilePS5103224.329153211IPR001471AP2/ERF domain
SMARTSM003801.6E-37153217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-33153212IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-23153213IPR016177DNA-binding domain
PfamPF008476.2E-15153203IPR001471AP2/ERF domain
PRINTSPR003679.9E-11154165IPR001471AP2/ERF domain
PRINTSPR003679.9E-11177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASHSEVSAL WFIEKHLLEE LSPVATYRWM IHESASTESS SDSSPMIFGS SSSSAPVDVS  60
GSLFKPEIID LSTPRFMDSI SVSDFDFKPS YQTGNQFEPE LKTQIPSASD DDSKSNRKPP  120
LKISVPTKTG WIKFNPQPEV AKPSQAIAEE REHYRGVRQR PWGKYAAEIR DPNKRGSRIW  180
LGTFDTAIEA ARAYDEAAFR LRGSKAILNF PLEVGKWKPR SDAADGEKKR KREEIDDEDV  240
KVAEKVLKTE QNFNSGESVP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP SFGYSQLTVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29152214163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03660.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595651.11e-160PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803411e-138EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0D3D9T21e-159A0A0D3D9T2_BRAOL; Uncharacterized protein
TrEMBLA0A397Z4L21e-159A0A397Z4L2_BRACM; Uncharacterized protein
TrEMBLQ2A9R31e-159Q2A9R3_BRAOL; Ethylene responsive element binding factor
STRINGBo7g077410.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-98ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]