PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03642.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 102aa MW: 11715.1 Da PI: 9.0544 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.6 | 2.2e-13 | 20 | 96 | 12 | 94 |
HTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 12 ksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ l++p +f++++ gg+ s t l++ es r+W+ k+ ++++ l++GW+eF+ an+L+ g +++ +++g++ f +v Rsa1.0_03642.1_g00004.1 20 SHTHLMIPEDFFSKYieeeGGV---SATAELKSdESDRTWKAKI--TGRR----LGDGWREFAVANNLRFGGVILVRYEGDMVF--HV 96 44459**********9765444...556777765999*******..8888....************************998888..44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.729 | 9 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-16 | 10 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-15 | 10 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.04E-13 | 10 | 97 | No hit | No description |
SMART | SM01019 | 9.9E-18 | 12 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-8 | 20 | 94 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MAKSRLLLRP QFFHTLLPGS HTHLMIPEDF FSKYIEEEGG VSATAELKSD ESDRTWKAKI 60 TGRRLGDGWR EFAVANNLRF GGVILVRYEG DMVFHVSNXK HF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03642.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433753.1 | 6e-59 | PREDICTED: B3 domain-containing protein REM13-like | ||||
Swissprot | P0CAP5 | 4e-32 | REM13_ARATH; B3 domain-containing protein REM13 | ||||
TrEMBL | A0A0D3DVL7 | 9e-46 | A0A0D3DVL7_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g099680.1 | 1e-46 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24650.1 | 2e-34 | DNA binding;DNA binding;sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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