PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03624.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 320aa MW: 36300.4 Da PI: 8.1935

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03624.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	208	232	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 ++C+ C + F++ +++k+H+ t H Rsa1.0_03624.1_g00006.1 208 FSCKSCRQFFPSFEDFKVHLETneH 232 89*****************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10910	5.91E-28	42	185	No hit	No description
SuperFamily	SSF57667	5.1E-5	200	238	No hit	No description
PROSITE pattern	PS00028	0	210	232	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MIKNFTAEEK EEKEKLNKQQ VESWRMMKKV NMARPEFATS RTVVLWDMDD CPLPNGYEPC 60 RLGPRIDTEL KSVGYNGELI IIAVGNLEGI PYDFLKALSS GGDVIKHSSF GIFDEVVSFF 120 LSPGSQPPIS IMLISTIVSL RESVTRNIYM RDISGYNLLL AYPPNSEPED PHPSSLVFVG 180 GEWLWGRDSL LKDSGSETRR LDTGCEQFSC KSCRQFFPSF EDFKVHLETN EHTNRVRLGA 240 SMRGLKYVLA AKNFEARKQS KNYLKLVDGQ KLTFQRLHEF LTFDGKKKAS NLEFQKEEAQ 300 SSLAKKNPTA KEKEAKNFGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03624.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018467622.1	0.0	PREDICTED: uncharacterized protein LOC108839338
TrEMBL	A0A398AUC3	9e-92	A0A398AUC3_BRACM; Uncharacterized protein
STRING	Bra026333.1-P	2e-82	(Brassica rapa)