PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03623.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 294aa MW: 33392.3 Da PI: 9.4862

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03623.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.5	3.2e-15	28	120	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 ffk++ +d +++++ +p +f+++ ++ s ++++++ g sWevk+ + +++ y+ ++GW++Fv++n L +++ v+F+++ Rsa1.0_03623.1_g00003.1 28 FFKIFQGEDLSAESMRAFPYDFIRNVPQD-DFSSNMVIRTQCGLSWEVKV--SMNPCFyYMEKRGWNQFVNDNALGDKELVTFTHT 110 8999999999***********888444.36679***********..999999566669******************99 PP SSSEE..EEEEE CS B3 86 grsefelvvkvf 97 g ++f +v ++ Rsa1.0_03623.1_g00003.1 111 GLMCF--NVNIY 120 88999..66665 PP
2	B3	44.9	2e-14	206	284	14	95
T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +l +p+ faeeh ++ +sk +t+ +++g sWev + ++++ ++++GW +++ L +gD++ Fkl++ +ef+l+v+ Rsa1.0_03623.1_g00003.1 206 FLLPIPRYFAEEHISN--QSKRVTIHHSDGnCSWEVLC--LVRKRKATFSSGWATLAREYPLSVGDICAFKLIKPTEFQLLVT 284 4589*******766..77889999999989**..666667889**********************9999998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.34E-15	22	123	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-15	24	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.54E-13	27	120	No hit	No description
SMART	SM01019	3.3E-15	28	123	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-13	28	120	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.603	28	123	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.9E-19	189	284	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.08E-19	189	285	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.362	193	287	IPR003340	B3 DNA binding domain
CDD	cd10017	2.82E-11	193	283	No hit	No description
SMART	SM01019	3.1E-13	195	287	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-12	200	283	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MMFPKERERG SSSGLGQGGE VDVENLSFFK IFQGEDLSAE SMRAFPYDFI RNVPQDDFSS 60 NMVIRTQCGL SWEVKVSMNP CFYYMEKRGW NQFVNDNALG DKELVTFTHT GLMCFNVNIY 120 EENGKEVVTP RRRPRTMASL SGIKKEAGKS SNKDVKKAEK TGDKLKSKRC EGGETSKKKK 180 KKMKSNNVEH TVPVFSVTLT ASYLKFLLPI PRYFAEEHIS NQSKRVTIHH SDGNCSWEVL 240 CLVRKRKATF SSGWATLARE YPLSVGDICA FKLIKPTEFQ LLVTGKVVEE IMTD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	135	PRRRPRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03623.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433189.1	0.0	PREDICTED: B3 domain-containing protein At3g17010-like
Swissprot	Q9LSP6	1e-86	Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBL	A0A397YMA2	1e-161	A0A397YMA2_BRACM; Uncharacterized protein
STRING	Bra018430.1-P	1e-159	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17010.1	1e-86	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]