PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03592.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 308aa    MW: 34986.3 Da    PI: 6.3694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03592.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.1e-5651311129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL++kv+++ ++  +++ +vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+t
  Rsa1.0_03592.1_g00005.1   5 LPPGFRFHPTDEELITHYLCRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTT 89 
                              79*************************999.88***************999999******************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkdke+++ +g lvg+kktLvfykgrapkgek++Wvmheyrle
  Rsa1.0_03592.1_g00005.1  90 GKDKEIYR-SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                              ********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-643151IPR003441NAC domain
PROSITE profilePS5100560.2515151IPR003441NAC domain
PfamPF023655.6E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDT GFTGKAVVDV DLNKCEPWDL PAKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKQPFTPAK EEWVVCRVFE KSTAIKKPQE QQPQSSFGSP CDANSSMANE  180
FEDIEFPNLN LNSSTISYNH IQDHQYPENS VYSGDNITSA AGLNMNMNMA TNISPWTTSL  240
LGQPLSPINS LLLKAFQIRN SYSFQKEMIS NINPSSLLQQ GVSNIMQNGS SSSQPQPQEE  300
GFNMDSIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-58415716171NO APICAL MERISTEM PROTEIN
1ut4_B3e-58415716171NO APICAL MERISTEM PROTEIN
1ut7_A3e-58415716171NO APICAL MERISTEM PROTEIN
1ut7_B3e-58415716171NO APICAL MERISTEM PROTEIN
3swm_A4e-58415719174NAC domain-containing protein 19
3swm_B4e-58415719174NAC domain-containing protein 19
3swm_C4e-58415719174NAC domain-containing protein 19
3swm_D4e-58415719174NAC domain-containing protein 19
3swp_A4e-58415719174NAC domain-containing protein 19
3swp_B4e-58415719174NAC domain-containing protein 19
3swp_C4e-58415719174NAC domain-containing protein 19
3swp_D4e-58415719174NAC domain-containing protein 19
4dul_A3e-58415716171NAC domain-containing protein 19
4dul_B3e-58415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03592.1_g00005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266581e-110AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026861e-110CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463386.10.0PREDICTED: NAC domain-containing protein 59-like
SwissprotQ9FLJ25e-82NC100_ARATH; NAC domain-containing protein 100
TrEMBLM4E0M20.0M4E0M2_BRARP; Uncharacterized protein
STRINGBra022319.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.10.0NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]