PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03561.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 75aa    MW: 8551.64 Da    PI: 8.4672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03561.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.72.4e-0727572055
                      AP2 20 rdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             r p      +r++l ++ t+e+A  a+++a+ +l+g
  Rsa1.0_03561.1_g00003.1 27 RNP-----GARVWLRTYETPEDAVVAYDRAAFQLKG 57
                             344.....49**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.43165IPR001471AP2/ERF domain
SMARTSM003801.8E-41971IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-102866IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-142966IPR001471AP2/ERF domain
CDDcd000185.69E-143067No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MSGFDYSDLI SSPDSVNNGV NPPVFYRNPG ARVWLRTYET PEDAVVAYDR AAFQLKGSKA  60
KLNFPHLIRM CERRD
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03561.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023885e-32AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAF3250895e-32AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds.
GenBankAF3705405e-32AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds.
GenBankAY0724715e-32AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds.
GenBankAY0883875e-32AY088387.1 Arabidopsis thaliana clone 6397 mRNA, complete sequence.
GenBankCP0026855e-32CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142287.16e-20PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013634474.16e-20PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013665711.17e-20ethylene-responsive transcription factor 13
RefseqXP_013725494.16e-20ethylene-responsive transcription factor 13-like
RefseqXP_018478704.15e-20PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K17e-20ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A078GDM42e-18A0A078GDM4_BRANA; BnaC04g49870D protein
TrEMBLA0A078GZB81e-18A0A078GZB8_BRANA; BnaA04g25900D protein
TrEMBLA0A0D3C6A91e-18A0A0D3C6A9_BRAOL; Uncharacterized protein
TrEMBLA0A397ZPV62e-19A0A397ZPV6_BRACM; Uncharacterized protein (Fragment)
TrEMBLA0A3P6CCL12e-18A0A3P6CCL1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D0C91e-18A0A3P6D0C9_BRACM; Uncharacterized protein
TrEMBLM4F9671e-18M4F967_BRARP; Uncharacterized protein
STRINGBra037630.1-P2e-19(Brassica rapa)
STRINGBo4g195220.12e-19(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-22ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]