PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03474.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 183aa    MW: 20184.4 Da    PI: 5.7156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03474.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.4e-172271255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  Rsa1.0_03474.1_g00005.1 22 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 71
                             69****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-222180IPR016177DNA-binding domain
CDDcd000181.01E-322181No hitNo description
SMARTSM003801.3E-372285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-322280IPR001471AP2/ERF domain
PROSITE profilePS5103223.632279IPR001471AP2/ERF domain
PfamPF008475.3E-112271IPR001471AP2/ERF domain
PRINTSPR003678.0E-132334IPR001471AP2/ERF domain
PRINTSPR003678.0E-136181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSGLSNSSNK SRKDGQAGIP SAYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT  60
AYDVAAFHFR GREARLNFPD LVSSLPRPAD SSADSVRMAA HEAALSLRTE PVEPAMQVDT  120
SSSSNVGQTM VSLSPREIQA INESTLGSPT MLMHSSYDSM GFDNDVGMNV WDTYQTDYSL  180
WDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-172384668ATERF1
3gcc_A1e-172384668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03474.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-144AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-144AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0107641e-144BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds.
GenBankBT0117901e-144BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds.
GenBankCP0026841e-144CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460189.11e-132PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-103ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D3APU91e-114A0A0D3APU9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D9C01e-114A0A3P6D9C0_BRAOL; Uncharacterized protein
STRINGBo2g072910.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-105ERF family protein