PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03463.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 308aa MW: 35901.7 Da PI: 10.3224 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.5e-17 | 21 | 100 | 9 | 94 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +v k + lp +f+++ + ++ s +++++ e+g sWev + +k+++ y+ ++GW++Fv++n L e++fv+F+++g ++f Rsa1.0_03463.1_g00002.1 21 YVQK--QRALPYDFMQNLS-DNDLSYKMVIRAEWGSSWEVDI--SKNPKFyYMEKSGWNQFVSDNALGENEFVTFTHTGLMRF--D 99 4444..459******5554.456999****************..******566669********************9887777..4 PP E CS B3 94 v 94 v Rsa1.0_03463.1_g00002.1 100 V 100 4 PP | |||||||
2 | B3 | 33.8 | 5.8e-11 | 219 | 298 | 13 | 95 |
TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ l lp+ f eh + esk+ t+ + ++ sW+v + + +r+v+++GW + +++ Lk+gD ++Fkl++ +ef l k Rsa1.0_03463.1_g00002.1 219 LKFLLLPRVFEVEHI--TSESKEYTIHHwKRKCSWNVLC--LVRENRTVFSSGWCRLAREFPLKVGDRCTFKLIKPTEFVLITK 298 456888999966664..457789999998999*******..888888**************************99888855544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.65E-16 | 11 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.492 | 11 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-15 | 11 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.26E-12 | 12 | 104 | No hit | No description |
Pfam | PF02362 | 4.0E-15 | 15 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-16 | 17 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-12 | 203 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-15 | 205 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.729 | 207 | 301 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.31E-6 | 208 | 291 | No hit | No description |
SMART | SM01019 | 4.4E-6 | 210 | 300 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-9 | 219 | 299 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MIRCERFETL AFKLTVFHSL YVQKQRALPY DFMQNLSDND LSYKMVIRAE WGSSWEVDIS 60 KNPKFYYMEK SGWNQFVSDN ALGENEFVTF THTGLMRFDV NIYNPDGKEI VTPRKPPPTT 120 PFSGIKKKEG ESSYKDVKKE DETCESVEGV ELEATKKKAE ASKSKTSKKK KSKKVVSYVG 180 VGEPSRGRKK KAEKLKTFKK KKIKKGVPEF EITIRKSYLK FLLLPRVFEV EHITSESKEY 240 TIHHWKRKCS WNVLCLVREN RTVFSSGWCR LAREFPLKVG DRCTFKLIKP TEFVLITKKS 300 RKEITVIG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 194 | GRKKKAEKL |
2 | 187 | 201 | RKKKAEKLKTFKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03463.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189348 | 2e-90 | AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489745.1 | 1e-176 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 3e-93 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | A0A3N6PV11 | 1e-145 | A0A3N6PV11_BRACR; Uncharacterized protein | ||||
STRING | Bra022189.1-P | 1e-137 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 3e-87 | B3 family protein |
Publications ? help Back to Top | |||
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