PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03454.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 337aa    MW: 38102.9 Da    PI: 5.3267
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03454.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.73.9e-312882155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             kprl+Wt+eLH+ F+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  Rsa1.0_03454.1_g00008.1 28 KPRLKWTCELHHIFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 82
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-272682IPR009057Homeodomain-like
SuperFamilySSF466895.55E-152782IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-212883IPR006447Myb domain, plants
PfamPF002495.7E-63081IPR001005SANT/Myb domain
PfamPF143791.5E-22130177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MCLLMESNTT NGNNQKTKMS LVLSTDAKPR LKWTCELHHI FIEAVNQLGG PNKATPKGLM  60
KAMEIPGLTL YHLKSHLQKY RLGKSLKFDD NNLEAVSSAS ETQEAESKND STDFRGSVNV  120
ENNNPANEGV QITEALQLQM EVQKKLHEQI EVQRHLQVKI EAQGKYLQSV LLKAQQTLAG  180
YTSSTLGMDF ARTELSRLAS MVNQSSSFSE VTQVEEYEEA EDVEDGFLWC KKPENRVITQ  240
PRRSVESSLT SLDSLETKLV NNNNERVSVE LPLMEIKSEV PKNKKRNLND IVFLECQPSN  300
KRNFGADDDD DEQHLRLSLN SYKKDMGTWP NIELGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-202784158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03454.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462267.10.0PREDICTED: myb family transcription factor PHL8-like isoform X2
SwissprotF4I2741e-161PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A3P6H6430.0A0A3P6H643_BRAOL; Uncharacterized protein
STRINGBo6g109120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-157G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]