PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03397.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 360aa    MW: 40353.3 Da    PI: 4.7194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03397.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12189232654
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Rsa1.0_03397.1_g00002.1 189 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 232
                              589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16186250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10189232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.95E-5190232No hitNo description
Gene3DG3DSA:4.10.280.109.4E-17190248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MELSTQMNVF EELLVQTKQE TTDNINTNIN NMSFSGGFDH HHHHQQLFPN GWNIDYLCFN  60
NEEEDENTLL YSSSFMDLIS QPPPLLLHQT PPLPPPSSSS PPLTSYVAAT FDYPFLEALQ  120
EIIDSSSPSP PLMLPTSQED SFINPTSYPS PLIESDQSKS FSVGYCGGGG ETTNKKKSKK  180
LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDAIDYMK ELLDKINKLQ  240
DEEQELGNSN GSHHSKLFGD IKDLNTNEPM VRNSPKFEVD RRVVDTRVDI CCSPKPGLLL  300
STVNTLETLG LEIEQCVISC FSDFSLQASC SEAAQQRDFV TSEDIKQALF RNAGYGGNCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174196KKKSKKLEGQPSKNLMAERRRRK
2191198ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03397.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485684.10.0PREDICTED: transcription factor bHLH93
SwissprotQ9LSL10.0BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3P5YIV80.0A0A3P5YIV8_BRACM; Uncharacterized protein
TrEMBLM4E6K00.0M4E6K0_BRARP; Uncharacterized protein
STRINGBra024404.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-177beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]