PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03315.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 363aa    MW: 41620.2 Da    PI: 9.0361
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03315.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.9e-1177112338
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                              ++k  rr+++NReAAr+sR+RKka++++Le+   +L
  Rsa1.0_03315.1_g00001.1  77 PDKTRRRLAQNREAARKSRLRKKAYVQQLETSRLKL 112
                              58999*************************865444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.1E-774121No hitNo description
SMARTSM003381.0E-475133IPR004827Basic-leucine zipper domain
PfamPF001707.1E-877108IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.82977121IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.07E-779119No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141449.7E-30165240IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNTTSTHVVP PRRFEIYETT TLSQVSMWEE SFKNNGGIYT PNSIVIPTNG KPDSLSEDTS  60
NGTPHKFDQE ASTSRHPDKT RRRLAQNREA ARKSRLRKKA YVQQLETSRL KLIHLEQELN  120
RARQQGFYEG NRVDTNALGF SDKMSSGIVA FEMEYGHWVQ EQNRQITELR TVLHGQVSDV  180
ELRLLVDNAM KHYFQLFRMK SAAAKIDVFY IMSGMWKTSA ERFFLWIGGF RPSELLKVLL  240
PHFDPLMDQQ VLDVCNLRQS CQQAEDAVSQ GMEKLQHTLA DSVAAGNLGE GSYIPQITCA  300
MERLEALVSF VNQADHLRHE TLQQMHRILT TRQAARGLLA LGEYFQRLRA LSSSWATRQR  360
EPT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03315.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530850.0AK353085.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-10-F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471318.10.0PREDICTED: transcription factor TGA4 isoform X1
RefseqXP_018471321.10.0PREDICTED: transcription factor TGA4 isoform X1
RefseqXP_018471322.10.0PREDICTED: transcription factor TGA4 isoform X1
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A3P6A6G70.0A0A3P6A6G7_BRACM; Uncharacterized protein
TrEMBLM4EII90.0M4EII9_BRARP; Uncharacterized protein
STRINGBra028604.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.20.0TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]