PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03298.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 573aa    MW: 64345.9 Da    PI: 4.8591
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03298.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.64.4e-48131392128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i  vd+ykv+P  Lp  + +k+++++w++F++r++ky++  r++r t++gyWka
  Rsa1.0_03298.1_g00003.1  13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPTVLPglSVLKSGDRQWFYFTPRNRKYPNAARSSRGTATGYWKA 97 
                              69***************************.89***************644888899****************************** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              tgkd+ ++  +++ vglkktLvfy+grap+ge+tdWvmhey++
  Rsa1.0_03298.1_g00003.1  98 TGKDRIIVY-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 139
                              ********9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.18512162IPR003441NAC domain
SuperFamilySSF1019417.06E-5512162IPR003441NAC domain
PfamPF023652.4E-2514138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MANSCLKGGR FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDVY KVDPTVLPGL  60
SVLKSGDRQW FYFTPRNRKY PNAARSSRGT ATGYWKATGK DRIIVYNSRS VGLKKTLVFY  120
RGRAPNGERT DWVMHEYTMD EEELGRCKNA KEYYALYKLY KKSGAGPKNG EEYGAPFQEE  180
EWLDDDDDDG EEEADDVAVP DDHVVRYENI PRVDNVLFCN PVNVRSDDFN KLLNEIPYAP  240
GLAPRQMNDV SGVMHVNSQE EMQSTLLNNS PGQFLAPWEV GMFLPSCQPN SIHSSYQSHV  300
RSADSFDGSE VKSAFKTSGV APFVFEKEDY IEMDDLLTPD QGAVSVEKPG QFLNPGEYEH  360
FNDYDQLFHD VSMSFDLEPV FQETYADLSS VSNFANDGRQ PFLYQQQFQD QTLETQVNSF  420
MDPNPNANQL VDDVWFKDAQ AALYDQPQSS SLAFASPSSG LMPESKNQEC QNGGETRSQF  480
SSAMWALLDS VPSTPASACE GPLNRTFVRM SSLSRIRFNG TSVTTSKVTV AKKGIGNKGF  540
LLLSVMGAMC AFFWVFIVAT VGVQGRHRYL NMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-441416819171NO APICAL MERISTEM PROTEIN
1ut4_B9e-441416819171NO APICAL MERISTEM PROTEIN
1ut7_A9e-441416819171NO APICAL MERISTEM PROTEIN
1ut7_B9e-441416819171NO APICAL MERISTEM PROTEIN
4dul_A9e-441416819171NAC domain-containing protein 19
4dul_B9e-441416819171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03298.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487250.10.0PREDICTED: NAC domain-containing protein 16-like
SwissprotA4FVP60.0NAC16_ARATH; NAC domain-containing protein 16
TrEMBLA0A0D3CGH30.0A0A0D3CGH3_BRAOL; Uncharacterized protein
STRINGBo5g085440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.10.0NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]