PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03281.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 180aa MW: 20572.4 Da PI: 8.3378 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 17 | 75 | 6 | 48 |
HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++ +k+ G++ +W+ Ia +++ gRt++++ ++ +++l Rsa1.0_03281.1_g00002.1 17 PQEQDLIIRMHKLIGNRyflvpplilrlitfpntRWSQIAGRLP-GRTDNEVENYCNTHL 75 689*****************************************.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.0E-5 | 11 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-13 | 17 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-7 | 17 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-6 | 17 | 75 | No hit | No description |
SuperFamily | SSF46689 | 3.9E-6 | 41 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEELSETKYQ KRRHVPPQEQ DLIIRMHKLI GNRYFLVPPL ILRLITFPNT RWSQIAGRLP 60 GRTDNEVENY CNTHLIKKSN PKKQNATESV EATPSFIDKP VIYTEVRRSH GEEGTTTTCI 120 EETNCFGNDV PIGSPAPLIS HYPDSQTLLC LTHVLPSPIS FPFFGTLLNS SKRDNFSHRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03281.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282345.2 | 9e-46 | transcription factor MYB82 | ||||
Swissprot | Q9LTF7 | 4e-46 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | R0GVN8 | 8e-45 | R0GVN8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006282345.1 | 1e-45 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 3e-41 | myb domain protein 82 |