PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03258.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 268aa    MW: 28373.5 Da    PI: 6.5167
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03258.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34521412100
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+ +++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+
  Rsa1.0_03258.1_g00001.1  52 FLTKTYQLVDDPVYDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFR 128
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrk 100
                              +g+k ll++i+r 
  Rsa1.0_03258.1_g00001.1 129 RGEKILLRDIQRC 141
                              ***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-5648141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3749141IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.59E-3449140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3152140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-205275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-20103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1705.2E-5225253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MPGEQTGETP TVAGVGGGGG GCSAGNSGGS SGCGPGGGGG GGDSQRSIPT PFLTKTYQLV  60
DDPVYDDLIS WNDDGSTFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW  120
EFSNDCFRRG EKILLRDIQR CPPAQHLQAR RFSYGISNAG RSLSLLWPAA VPVVAPAVSP  180
SNSGEEQVIS SNSSPAAAAA ASGGGGGGQV GVVLQRMTSC TTAPELVEEN ERLRKENVQL  240
SQELTKLKGL YSNIYTLMSN FTSGQAEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-273514015128Heat shock factor protein 1
5d5v_B5e-273514015128Heat shock factor protein 1
5d5v_D5e-273514015128Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03258.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325471e-51AC232547.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124795.11e-119PREDICTED: heat stress transcription factor B-2b
RefseqXP_013718619.11e-119heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-98HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A397XW531e-118A0A397XW53_BRACM; Uncharacterized protein
TrEMBLM4FIN91e-118M4FIN9_BRARP; Uncharacterized protein
STRINGBra040968.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.17e-94HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]