PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03249.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 536aa    MW: 57537.6 Da    PI: 6.5995
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03249.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.5e-30219278159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  Rsa1.0_03249.1_g00003.1 219 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 278
                              58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31204280IPR003657WRKY domain
SuperFamilySSF1182901.7E-27212280IPR003657WRKY domain
PROSITE profilePS5081128.69214280IPR003657WRKY domain
SMARTSM007749.3E-37219279IPR003657WRKY domain
PfamPF031064.4E-27220278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEVLLKLSPS DSLLKDKVLG SAQILESSKG DDDHQELESA KAEMSEVKEE NEKLKGMLER  60
IESDYKSLKL RFFDIVQQEA SNNPTQDQNM VGLQKATMDL SSCDQEHELV SLSLGRSASR  120
SDNTSKKEDK SDAISKEVNA NEELTKAGLT LGFSNGSLSS QENSSEEAPG ETLPPGKVTG  180
KRSSPAPDSG GDVEGEAGQQ NHVKRARVCV RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR  240
AYYRCTVAPG CPVRKQVQRC ADDMSILITT YEGTHSHPLP LSATTMASTT SAAASMLLSG  300
SSSSSSSSAA EMIGNNLYDN SRFINNNKSF YSPTLHSPLH PTVTLDLTAP QHSSSSSLPS  360
LNFNKFSNSF QKFPSTSLNF SSNPSSSSTT LNIPAIWSSG YSSYTPYPYN NVQFGTSNLG  420
KTVQNSQSLT ETLTKALTSD PSFQTVIAAA ISSMVGSNGE KQIVHPISNN VQQTAAKNNI  480
KGCGGYFSSL LMSNIIANNQ TGASSDQPSS QLPLSMFKNS SSSSSTTSFV NKEEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21206280174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03249.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121710.0FJ012171.1 Brassica napus WRKY72 transcription factor (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473567.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLV9LYL30.0V9LYL3_BRANA; WRKY transcription factor 72.1
STRINGBra006283.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72