PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03182.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 445aa MW: 49080.1 Da PI: 10.077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.5e-06 | 111 | 131 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f G+C++Gd+C F+H Rsa1.0_03182.1_g00005.1 111 PCNNFVTKGFCHRGDTCLFSH 131 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.408 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 53 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.36 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0039 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.436 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.4 | 86 | 105 | No hit | No description |
SMART | SM00356 | 1.1 | 109 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.75 | 111 | 131 | No hit | No description |
PROSITE profile | PS50103 | 11.451 | 111 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.019 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-5 | 198 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0045 | 199 | 224 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.26 | 203 | 222 | No hit | No description |
SMART | SM00356 | 1.7 | 226 | 250 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 228 | 250 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.066 | 228 | 248 | No hit | No description |
PROSITE profile | PS50103 | 10.868 | 228 | 251 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF142695 | 1.83E-9 | 390 | 441 | IPR032677 | GTP cyclohydrolase II |
Pfam | PF00925 | 1.7E-5 | 394 | 441 | IPR032677 | GTP cyclohydrolase II |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MASQTCIKNK SVPSEEAKAT KKEAKARKKI TQERIALGVK KLKLKPPVAP RPKPIIFCRH 60 HLKGRCHEGE QCKFSHDTTP ETKSLPCCYF ATQSCMKGDD CPYDHDLSKY PCNNFVTKGF 120 CHRGDTCLFS HKGTPQAASD RPVANVTTSS SNIAAASSSF EALNVKSGVK ENDLSKNQEK 180 MDSQTCIKNK SVPSKEAKAR KKPCRYLATQ SCMKGDDCPY DHDLLKYPCI NFVTNGFCHM 240 GDKCLFSHKA ASDRPGENVT ISSSNTAAAS VLPQKSNKQT VRQAIARLQG IQPRVSSSST 300 FLKPSSQSNQ KNSTVASSSK INEHATPPQL PPLRKPSVVP KGNISSKSPE FLSSFSHGKQ 360 LIYIWSESES CDASSLKGFN VYKYRRKRDK LVERITVSRL PTKWGLFQAY CYRSKLDGAE 420 NIALVKGNIG NGQDILVSVS SRKEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 384 | 389 | RRKRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03182.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470393.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 65-like | ||||
Swissprot | Q9LTS7 | 2e-71 | C3H65_ARATH; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | R0EV46 | 6e-77 | R0EV46_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.1569s0001.1.p | 6e-78 | (Capsella grandiflora) | ||||
STRING | XP_006280089.1 | 1e-77 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12160 | 15 | 16 |