PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_03148.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 317aa MW: 34989.3 Da PI: 10.4261 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 203.2 | 3.3e-63 | 131 | 269 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsn 86 +++k++aal+v++v+ptf+++d gnl+++r+G++++++++a++erkydWekkq fals+tev++++++++++s+effhdp++k+sn Rsa1.0_03148.1_g00004.1 131 AIFKGRAALSVEPVLPTFTKIDPGNLRIDRRGSVMMTFMPAVSERKYDWEKKQLFALSPTEVGSVISMGPQDSSEFFHDPSMKSSN 216 59************************************************************************************ PP Whirly 87 eGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +G+vrk+l+++Pl+d +G+f++l+v ++ ++n++++vPvskaefavl+s+++ Rsa1.0_03148.1_g00004.1 217 AGQVRKSLSIKPLADSTGYFFQLTVADNIHNSNDRIVVPVSKAEFAVLKSAFS 269 **************************************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.0E-68 | 120 | 289 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.41E-60 | 123 | 291 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.7E-59 | 132 | 267 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 317 aa Download sequence Send to blast |
MMTNLMILTI WAQSRRSKKP IYPLVYEKRA ILNGSGKTRF DPTIKPQKKE KPQCDAAAAL 60 VLVFTLGRNM MKQARTLLSR SLCNQSNSLF EGSSKSSALR GFATWTDSSS STTKRGGDAN 120 KPSGRVFAPY AIFKGRAALS VEPVLPTFTK IDPGNLRIDR RGSVMMTFMP AVSERKYDWE 180 KKQLFALSPT EVGSVISMGP QDSSEFFHDP SMKSSNAGQV RKSLSIKPLA DSTGYFFQLT 240 VADNIHNSND RIVVPVSKAE FAVLKSAFSI LYYVQFALPH ILGWDRITGG DVGIAAQGFA 300 SLPKADPMQL ELEWGKE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 5e-93 | 118 | 289 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 5e-93 | 118 | 289 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 5e-93 | 118 | 289 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 5e-93 | 118 | 289 | 3 | 168 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_03148.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454256.1 | 1e-166 | PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | Q8VYF7 | 1e-113 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A0D3CZT6 | 1e-158 | A0A0D3CZT6_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g112840.1 | 1e-159 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12358 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-115 | WHIRLY 2 |