PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03113.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ARF | ||||||||
Protein Properties | Length: 892aa MW: 98752.6 Da PI: 6.4109 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.4e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+ Rsa1.0_03113.1_g00003.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 212 99*****************************96555555..8******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F ++++ +l+++++r+ Rsa1.0_03113.1_g00003.1 213 VLFI--WNDKNQLLLGIRRA 230 ****..7888889****997 PP | |||||||
2 | Auxin_resp | 116.6 | 2.2e-38 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPra++seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rW nS+Wrs+k Rsa1.0_03113.1_g00003.1 255 AAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPARWANSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-48 | 114 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 123 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-20 | 128 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.435 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.7E-7 | 561 | 841 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.86E-7 | 746 | 827 | No hit | No description |
PROSITE profile | PS51745 | 24 | 752 | 836 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 892 aa Download sequence Send to blast |
MRLSSAGFDT HPHEVTGEER VLNSELWHAC AGPLVSLPPL GSRVVYFPQG HSEQVAASTN 60 KEVDAHTPNY PSLQPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV 120 PNRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELM ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRACPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ICDLDPARWA NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP 360 LTTFPMYPSP FPLRLKRPWP PPGLPSFHGL REDDLGMGMG MSMSSPLMWD RGLQSMNFQG 420 MGVNPWMQQR LDASGLLGVQ NDVYQAMAVA AYQDMRGIDP AKAAASLLQF QSPSGFSMQS 480 PSLVQPQLLL QQLSQQQQQQ QHQAYLPETH QPQSQAQSQP NNILSQQQQQ VVDNHNQFSS 540 SPTTATRAMS QFGSASQSNT SLLQSMTSLC HQQIFSDTNG GNNPITPLHT LLSNFPQDES 600 SQLLNLTRTN SAMTSSGWPS KRQAVDSSFQ HSGAGNNNNN QSVMEQLGQT HTSNVPPNII 660 SLPPFPSGRE CVQEENPSDP HSHLLFGVNI DSSSPLMPNG MSNLRSIGIE GTLPFTSSTF 720 NNEFSGNLAM TTPSSCIDEQ GSLQSSENQQ SNTFVKVYKS GSFGRSLDIK KFSSYNELRS 780 ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK ILSPQEVQQM 840 GKRGLELLNS APPSSNNVDK LPSNGNCDDF GNRSDPRSLG NGIASVGGSF NY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 21 | 359 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03113.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979468 | 0.0 | JN979468.1 Brassica rapa subsp. pekinensis auxin response factor 6 (ARF6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450596.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X1 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | V4L254 | 0.0 | V4L254_EUTSA; Auxin response factor | ||||
STRING | AT1G30330.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |