PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03111.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 331aa MW: 38213.5 Da PI: 4.7073 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.9 | 1.3e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWk Rsa1.0_03111.1_g00005.1 6 LPPGFRFHPTDEELVGYYLDRKVNGQTIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWK 90 79****************************.99**************95334455788**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl Rsa1.0_03111.1_g00005.1 91 ATGKDRAVES-KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133 *********9.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-63 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.459 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAPMSLPPGF RFHPTDEELV GYYLDRKVNG QTIELEIIPE VDLYKCEPWD LPEKSFLPGN 60 DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRAVES KKMKMGMKKT LVYYRGRAPH 120 GLRTNWVMHE YRLTHLPSSS PSSSIKESYA LCRVFKKQIQ IPKRKDEEMM MGTSVGKEKK 180 EELEEENMWR KCEMERESEE DENLKIASAE TSSSEXERES EEDENLKIAS AETSSSELTQ 240 GILLDEANNS SSFALHFSSS LLDDHDQIFA NDSYLPYYTP LQLQDFPQLS MNEAQIMSID 300 NSKQQDFQCR DSMNGTLDEI FSFSSSATLP L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-57 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-57 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-57 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-57 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-57 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-57 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-57 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-57 | 1 | 158 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03111.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK176278 | 1e-157 | AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482117.1 | 0.0 | PREDICTED: NAC domain-containing protein 45-like | ||||
Swissprot | Q9FFI5 | 3e-83 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A397YME5 | 0.0 | A0A397YME5_BRACM; Uncharacterized protein | ||||
STRING | Bo6g036040.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8123 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-146 | NAC domain containing protein 20 |
Publications ? help Back to Top | |||
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