PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03106.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 385aa    MW: 43917.2 Da    PI: 9.1318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03106.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-112052822092
                              HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3  20 kkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                              kk+a++    + kk+++++++l +++g +W++++++   ++s+ y l +GWk+ v+ n+L+ + ++++   ++++++l
  Rsa1.0_03106.1_g00004.1 205 KKHAKKKgvdDDKKPKGVDVILLNRNGIKWNLNMRIweMRSSSNYALCTGWKDLVRKNDLQINQTITLWSFHSHDGTL 282
                              445555599988889*******************7745555666**********************987444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037549.6E-32139260IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.104.6E-18157289IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-13158288IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-11160273No hitNo description
PROSITE profilePS5086310.532224290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVTHDDDNKR SAGEKRCFDL FATLLHAYGD DEIRARRSQE EQERNMLMIR TVINAATNTF  60
LLGKRKIDDL ECKNQENTAS SFPSLVESKR RRVVVSDDDE PIRAEPIREI KPPVRERKGP  120
VKRKAPVKRK ELVGREPVKT PGWVYKLMRS NNGEGDAKMI FEKALTKTDL APNQARLLMP  180
FLQIADKNFL TEAERKILKE HQEAKKHAKK KGVDDDKKPK GVDVILLNRN GIKWNLNMRI  240
WEMRSSSNYA LCTGWKDLVR KNDLQINQTI TLWSFHSHDG TLYFAFDLST PALVPVNPPA  300
SSMALVAISE DPFVCEEANR RLLPKIPRSS RTPSVCIVPP PTSDSSNLYL LEGGLDLNRT  360
PPPEDTKMDH DLEDVQETHV WSTSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03106.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482200.10.0PREDICTED: B3 domain-containing protein At2g31720-like
TrEMBLA0A078FR871e-168A0A078FR87_BRANA; BnaC04g42190D protein
STRINGBra021738.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM275656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.12e-11B3 family protein