PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03106.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 323aa    MW: 36106.3 Da    PI: 8.2534
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03106.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.25e-3771071100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aCk+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r da+ ++ yeA+ r++dP+yG+v+ i++lqq
  Rsa1.0_03106.1_g00003.1   7 PCGACKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVLTISYEAQSRLHDPIYGCVSQIFSLQQ 92 
                              7***********************9979********************************************************** PP

                   DUF260  86 qleqlkaelallkee 100
                              q+ +l+a++ ll+ee
  Rsa1.0_03106.1_g00003.1  93 QVVSLQAQVFLLREE 107
                              ********9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.126108IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGGLGSPCGA CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD  60
RCDAVLTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VFLLREEASR KSTQGDCSEQ  120
GKFLAQDTPQ DLHSWFHQVV SDSSLNQMSD FASTSMDRDE SLCRSNEFLY YQEVMFPWSV  180
DNKVMMKKQV ILGVILLAVF LIFMNAKQVE ATRLLRTTLD SEMPSVFQSL QKGTVPESGR  240
NRCTHIPKGS GKVSQKRKRE SEACRWNLGS SVLGLFATRG GHRTGDAAVL PPVMRSSSYS  300
HCATRIKALQ PCERRVEDTL VFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-3631217120LOB family transfactor Ramosa2.1
5ly0_B8e-3631217120LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03106.1_g00003.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-130AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482384.11e-132PREDICTED: LOB domain-containing protein 14-like
SwissprotQ9SJW58e-97LBD14_ARATH; LOB domain-containing protein 14
TrEMBLM4DYZ01e-155M4DYZ0_BRARP; Uncharacterized protein
STRINGBra021737.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.12e-82LOB domain-containing protein 14
Publications ? help Back to Top
  1. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]