PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03095.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 402aa    MW: 46242.3 Da    PI: 4.6562
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03095.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35611532103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y+++ed+++++++sws+ +nsf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  Rsa1.0_03095.1_g00001.1  61 FLTKTYDLVEDSRTNHVVSWSQAKNSFIVWDPQAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFL 137
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+k+ll++i+r+k++
  Rsa1.0_03095.1_g00001.1 138 RGQKHLLKTIRRRKTS 153
                              *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.75E-3556150IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-3957150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5957150IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-186184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDPSYRFIKE EFPTGFNDSP SPPSTSTYSY LYSTSMAIND ATTSSSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNHVVSW SQAKNSFIVW DPQAFSTTLL PRFFKHNNFS SFVRQLNTYG  120
FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTSNNNQMQP PQSSSQQQSL DNCCIEVGRY  180
GLDGEMDSLK RDKQVLVMEL VKLRQQQQST KMYLKMIEEK LKKTESRQQQ MMSFLARAMQ  240
NPDFLQQLME QKEKRKEMEE AISKKRQRPI DQGTRNVVTV EDYDEEGGGG YGRYGNDAGS  300
SSAYMLQETY GDFSGFEMSE LDSLAMHIQG LGDQFSREEV LDVEKRDEEG EQKGYQKVNS  360
EIYGEGFWED MLNEGQNFDL EGDEENVDVL IEQLGYLGSS SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-245615312123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03095.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489151.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A397ZHV50.0A0A397ZHV5_BRACM; Uncharacterized protein
STRINGBo5g093470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B