PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_02992.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 713aa MW: 78582.6 Da PI: 7.9563 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.7e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD+ Rsa1.0_02992.1_g00004.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDS 195 89****************************987555555..8******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 +vF +++++ l+v+++r+ Rsa1.0_02992.1_g00004.1 196 IVFL--RSETGDLCVGIRRA 213 ****..4588999****996 PP | |||||||
2 | Auxin_resp | 115.5 | 4.5e-38 | 290 | 373 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Rsa1.0_02992.1_g00004.1 290 AVARAACGQPFEVVYYPRASTPEFCVKASDVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 373 56788999**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-37 | 104 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.02E-29 | 107 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.17E-21 | 111 | 212 | No hit | No description |
SMART | SM01019 | 1.9E-21 | 112 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.098 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.9E-32 | 291 | 373 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.407 | 600 | 688 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 713 aa Download sequence Send to blast |
MEQERSLDPQ LWHACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA 60 SVKFLADSET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDVAVNEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL IAGDSIVFLR SETGDLCVGI RRAKRGGLGS NGLGSDNNNG NSNNNNPYPG 240 FSGFLRDDEI TASKLMMMKR NATAAGGGGG NVSDANAPGG RVRVEAVAEA VARAACGQPF 300 EVVYYPRAST PEFCVKASDV RSAMRIRWCS GMRFKMAFET EDSSRISWFM GTVSAVQVAD 360 PIRWPNSPWR LLQVAWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPR KKLRIPQPFD 420 FPFDGTKFPV FSPGFAAGGN NGESMCYLSN DNNNNNTAPA GIQGARQAQQ LFGSPSPSLL 480 SDLNLNSFHS GNKLQQSSSS PAMFLSGFNP RHHHFDNIVV PRQARDAEFN NNNISCSLTI 540 GNPGLVQDKK KSGSVKTHQF LLFGQPILTE QQVMNRKREE AEKEEKGGLT WNYGLQGLET 600 GHCKVFMESE DVGRTLDLSV IGSYQELYRK LAEMFGIEER SDLLTHVVYR DANGVTKRIG 660 DEPFSNFMRS TKRLTIKMDI GGDNLRKTWI TGIRNGENGM DSSTKTGQLS IFA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 3e-71 | 10 | 394 | 22 | 353 | Auxin response factor 1 |
4ldy_B | 3e-71 | 10 | 394 | 22 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_02992.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN979475 | 0.0 | JN979475.1 Brassica rapa subsp. pekinensis auxin response factor 10 (ARF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018440901.1 | 0.0 | PREDICTED: auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | H9B4D6 | 0.0 | H9B4D6_BRARP; Auxin response factor | ||||
STRING | Bra011955.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |