PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02983.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 886aa MW: 97986.3 Da PI: 5.5803

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02983.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.4	7.1e-29	561	611	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Rsa1.0_02983.1_g00004.1 561 EKNVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 611 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.711	542	631	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-27	563	611	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-22	775	869	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.7E-23	784	865	No hit	No description
SMART	SM00666	3.3E-24	786	868	IPR000270	PB1 domain
PROSITE profile	PS51745	22.045	786	868	IPR000270	PB1 domain
Pfam	PF00564	5.8E-18	787	867	IPR000270	PB1 domain
CDD	cd06407	3.99E-35	787	867	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MEHPFASRDE GFGCYQDMST EEMNGLSFGS GVRNLMSDHM LNSSNSDLMN FDSFSTWCNS 60 PSYATDVLFA QYGLSTSHSM PFGAITSSPT LSGLTRSFHD LESSFHGEET SLVPEMSSPE 120 SGKRRRMTNQ KNGLPNLMNS TIPRSLSHSL DEKMLKALSL FMESSGSGEG ILAQVWTPIK 180 IGDQHMLSTC DQAYLLDPRL SQYREVSRKF TFASEANQCS FPGLPGRVFI SGVPEWTSNV 240 LYYKTEEYLR MKHAVDNEVR GSIAIPVLEA SGKTCCAVME LVTSKEKDNF DKEMDSVCRA 300 LQAVNLRTSA SPRPQYFSSN QRDALAEIQD VLRAVCHAHR LPLALAWIPC RGKDQPVNIY 360 GSNSGGSCVL CVEETACYVN DMKMEGFVHV CLEHCLRAKE GIVGKAFVSN QPFFSSDVKA 420 YDISEYPLVQ HARKYGLNAA VAIKLRSTYT GEDDYILELF LPLSMKGSLE QQLLLDSLSG 480 TMQRICRTLT TVSDVGEAGL SKFSQAKCSG KFQTIVSDSE LNSTRNIFSD ISSDKDNSST 540 GSQGTYEQDM RTQEKKKSTT EKNVSLSVLQ QHFSGSLKDA AKSLGVCPTT LKRICRQHGI 600 MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDSATGE FVAVCPFIKE LDTQKDPVRG 660 QEDVAQDTSF ELLEAKSVDN AIKLEEDIIT NGSFVEVDAS VKQWDWMAEQ SSFHGSEAKK 720 NNGNLSSQTI RCSGNINEPN QSMSCSMSGS SNGSDAAMLR SSSTSMDDCN QMRSHKSNSS 780 ESGPTTLTVK ATYIEDTIRF KFEPSLGCSQ LYKEVGKRFK LQEESFQLKY LDDEEEWVML 840 VTDSDLQECL EILYGMGKHT VKFLVRELSV PIGSSAGSNG YLGTCL

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MEHPFASRDE GFGCYQDMST EEMNGLSFGS GVRNLMSDHM LNSSNSDLMN FDSFSTWCNS  60
PSYATDVLFA QYGLSTSHSM PFGAITSSPT LSGLTRSFHD LESSFHGEET SLVPEMSSPE  120
SGKRRRMTNQ KNGLPNLMNS TIPRSLSHSL DEKMLKALSL FMESSGSGEG ILAQVWTPIK  180
IGDQHMLSTC DQAYLLDPRL SQYREVSRKF TFASEANQCS FPGLPGRVFI SGVPEWTSNV  240
LYYKTEEYLR MKHAVDNEVR GSIAIPVLEA SGKTCCAVME LVTSKEKDNF DKEMDSVCRA  300
LQAVNLRTSA SPRPQYFSSN QRDALAEIQD VLRAVCHAHR LPLALAWIPC RGKDQPVNIY  360
GSNSGGSCVL CVEETACYVN DMKMEGFVHV CLEHCLRAKE GIVGKAFVSN QPFFSSDVKA  420
YDISEYPLVQ HARKYGLNAA VAIKLRSTYT GEDDYILELF LPLSMKGSLE QQLLLDSLSG  480
TMQRICRTLT TVSDVGEAGL SKFSQAKCSG KFQTIVSDSE LNSTRNIFSD ISSDKDNSST  540
GSQGTYEQDM RTQEKKKSTT EKNVSLSVLQ QHFSGSLKDA AKSLGVCPTT LKRICRQHGI  600
MRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDSATGE FVAVCPFIKE LDTQKDPVRG  660
QEDVAQDTSF ELLEAKSVDN AIKLEEDIIT NGSFVEVDAS VKQWDWMAEQ SSFHGSEAKK  720
NNGNLSSQTI RCSGNINEPN QSMSCSMSGS SNGSDAAMLR SSSTSMDDCN QMRSHKSNSS  780
ESGPTTLTVK ATYIEDTIRF KFEPSLGCSQ LYKEVGKRFK LQEESFQLKY LDDEEEWVML  840
VTDSDLQECL EILYGMGKHT VKFLVRELSV PIGSSAGSNG YLGTCL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02983.1_g00004.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018476896.1	0.0	PREDICTED: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M4C7X9	0.0	M4C7X9_BRARP; Uncharacterized protein
STRING	Bra000307.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]