PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_02906.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 31322.3 Da PI: 8.7641 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131 | 8.7e-41 | 5 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 lp+GfrF Pt+ el+++yL+ ++ g + ++ + i+ +d+++veP +Lp+ ++++++++w fF++r++++a+g r++r+t+sgy Rsa1.0_02906.1_g00002.1 5 LPVGFRFYPTEVELISFYLRIQLGGGHATIYSLIPIIDVFNVEPTQLPNlageRCRGDKEQWLFFVPRQEREARGGRPSRTTNSGY 90 79****************************999**************9656766667888************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 Wkatg+ +v+s +++++g+kkt+vfy g+apkg+kt+W m+ey+ Rsa1.0_02906.1_g00002.1 91 WKATGSPGPVFSPDNRVIGVKKTMVFYIGKAPKGRKTKWKMNEYK 135 ********************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-45 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.945 | 5 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-19 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MVEELPVGFR FYPTEVELIS FYLRIQLGGG HATIYSLIPI IDVFNVEPTQ LPNLAGERCR 60 GDKEQWLFFV PRQEREARGG RPSRTTNSGY WKATGSPGPV FSPDNRVIGV KKTMVFYIGK 120 APKGRKTKWK MNEYKAIDET ASVSTIPKLR HEFSVCRIYI KSGSSRAFDR RPTEGSGTET 180 RLLSNGIEES SRNTRPTSLE TTQSNSEMIA GISQLLERKL PNNGVETSSC ATISTSPETS 240 YSGGGDQVQL PVNVTSTQRI SDMVDGLSQP FWEWDQLNWP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-34 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-34 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-34 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-34 | 5 | 166 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 9e-34 | 5 | 166 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 7e-34 | 5 | 166 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 7e-34 | 5 | 166 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_02906.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL138641 | 3e-86 | AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. | |||
GenBank | CP002686 | 3e-86 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491634.1 | 0.0 | PREDICTED: putative NAC domain-containing protein 61 | ||||
Swissprot | Q9M290 | 1e-126 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | A0A3P5Z266 | 0.0 | A0A3P5Z266_BRACM; Uncharacterized protein | ||||
STRING | Bra019459.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-141 | NAC domain containing protein 61 |