PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_02876.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 204aa MW: 23369.7 Da PI: 10.2203 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 291.5 | 8.2e-90 | 22 | 173 | 64 | 215 |
VOZ 64 aalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefg 149 +a++ak+ gk vgip+cega+++k+pwnaaelf+l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++ Rsa1.0_02876.1_g00005.1 22 HAVRAKTLGKVVGIPVCEGAVNTKCPWNAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQA 107 599*********************************************************************************** PP VOZ 150 glkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrl 215 g+krsyymdpqp++ fewhl+ey+ine+d +alyrlelkl+++kks+kg+v+kd+l+dlqkk+ ++ Rsa1.0_02876.1_g00005.1 108 GQKRSYYMDPQPPGLFEWHLFEYQINESDVCALYRLELKLTNGKKSPKGRVAKDPLVDLQKKMEKM 173 **************************************************************9886 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MQLQERFSHL QAARKEGRLG DHAVRAKTLG KVVGIPVCEG AVNTKCPWNA AELFHLELVE 60 GETIREWLFF DKPRRAYDSG NRKQRSLPDY SGRGWHESRK QLMKEQAGQK RSYYMDPQPP 120 GLFEWHLFEY QINESDVCAL YRLELKLTNG KKSPKGRVAK DPLVDLQKKM EKMGQLTPEG 180 ASDKPSPPTK GRTKATKERT KSTN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_02876.1_g00005.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479977.1 | 1e-152 | PREDICTED: transcription factor VOZ2-like | ||||
Swissprot | Q9SLB9 | 1e-105 | VOZ2_ARATH; Transcription factor VOZ2 | ||||
TrEMBL | A0A0D3C5T6 | 1e-120 | A0A0D3C5T6_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g191510.1 | 1e-120 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42400.1 | 1e-107 | vascular plant one zinc finger protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|