PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_02829.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 28751.2 Da PI: 8.4823 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.8e-18 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T++E+e ++ + lG++ W+tIa+ m+ gR+++++k++w++ Rsa1.0_02829.1_g00003.1 55 KGKFTPQEEETIISFHSILGNR-WATIAQQMP-GRSDNDIKNHWNSC 99 79********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.17 | 11 | 49 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-11 | 35 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.8E-22 | 35 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.574 | 50 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-15 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 55 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.60E-11 | 57 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-21 | 61 | 104 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRREENGRR RKTGNSSLTS TYTASATGVF SLPKLRCGKS CRLRWLNYLR PGVKKGKFTP 60 QEEETIISFH SILGNRWATI AQQMPGRSDN DIKNHWNSCL KKRLERNGID PMTHQPMINL 120 AVKTQSFNTD CGSSSCSTAS PFSSSFSSGS ARLLNKIATG ISSRQHGVDR IKNILSDPSI 180 TSINGQEEGF EQLKIDHGKM LASDDQTDDF LMWDEEKTRH FMEEIGVMDF QTNGVYNPSS 240 SAQYGVYESG LLDDHLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-22 | 17 | 105 | 20 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_02829.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018464684.1 | 1e-167 | PREDICTED: transcription factor MYB34-like, partial | ||||
TrEMBL | A0A3P6FEG9 | 1e-137 | A0A3P6FEG9_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g068030.1 | 1e-138 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 2e-61 | myb domain protein 47 |