PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02816.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 160aa MW: 17702.6 Da PI: 10.3499

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02816.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	53	7.5e-17	3	45	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 +r+rWt++LH +Fv+ave LGG e+A Pk++l+l+ k Ltl+hv Rsa1.0_02816.1_g00003.1 3 ARMRWTTTLHGCFVHAVELLGGLERAKPKSVLKLV--KYLTLAHV 45 69*******************************96..56888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-13	3	45	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-10	3	45	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.84E-6	4	45	IPR009057	Homeodomain-like
Pfam	PF14365	5.2E-22	60	133	IPR025521	Domain of unknown function DUF4409

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGARMRWTTT LHGCFVHAVE LLGGLERAKP KSVLKLVKYL TLAHVICVTV AMSTPTPVLT 60 INSPDGDLIV CVKINDQLAL QHPLLQKHKI QETPTGHMVQ KEENSAWQVW HRRSRACPRG 120 SIPVRRSEDT LFQKNETVSP NAAADRATRG HQATAAVMAL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02816.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018448541.1	1e-109	PREDICTED: uncharacterized protein LOC108820049
TrEMBL	A0A3N6SV48	2e-86	A0A3N6SV48_BRACR; Uncharacterized protein
STRING	Bo2g125650.1	2e-86	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23493	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-15	G2-like family protein