PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02799.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 290aa    MW: 31545.3 Da    PI: 8.4904
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02799.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-181358147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEdell  +v+++G+++W++I++ +  gR++k+c++rw + 
  Rsa1.0_02799.1_g00002.1 13 KGPWSPEEDELLQTLVQKHGPRNWSLISKPIS-GRSGKSCRLRWCNQ 58
                             79******************************.***********985 PP
2Myb_DNA-binding52.61e-1667109347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +++ eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Rsa1.0_02799.1_g00002.1  67 SFSLEEDETILHAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                              6999****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.31863IPR017930Myb domain
SuperFamilySSF466893.38E-3110106IPR009057Homeodomain-like
SMARTSM007172.9E-151261IPR001005SANT/Myb domain
PfamPF002491.2E-171358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241466IPR009057Homeodomain-like
CDDcd001675.73E-141557No hitNo description
SMARTSM007171.2E-1364112IPR001005SANT/Myb domain
PROSITE profilePS5129419.77465114IPR017930Myb domain
PfamPF002493.7E-1467109IPR001005SANT/Myb domain
CDDcd001673.22E-1067110No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2267113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSGSTRKETD RIKGPWSPEE DELLQTLVQK HGPRNWSLIS KPISGRSGKS CRLRWCNQLS  60
PEVEHRSFSL EEDETILHAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCRGGGWT  120
SDDGGNGGYD GNLTDEQPLK RTASGGGGGV VSTGLFMNPG SPSGSNVSEQ SSGTVLHVYK  180
PTARPGAVVI ESTVKDPVTS LSLSLPCVNE STQRKDTAEL FPVRKQEEER ERFNGDFMTV  240
VQEMIKTEVR SYMAGLQLGN GGGGSGSCVV QGVNGPSVGF RNFIEIVKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40121143105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-40121143105C-Myb DNA-Binding Domain
1msf_C1e-40121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02799.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478363.10.0PREDICTED: transcription factor MYB44
SwissprotO231601e-130MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A078HQ861e-169A0A078HQ86_BRANA; BnaA04g13540D protein
TrEMBLA0A3P6CK831e-169A0A3P6CK83_BRACM; Uncharacterized protein
STRINGBra032176.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-109myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]