PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02733.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 207aa    MW: 23702.6 Da    PI: 5.0207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02733.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-172979155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             + y+G+r++    +Wv+eIr+p     +  +r++lg++ tae+Aa+a++ a+ +l+g
  Rsa1.0_02733.1_g00005.1 29 PVYRGIRRRN-GDKWVCEIREP-----ThqRRIWLGTYPTAEMAARAHDVAAYALRG 79
                             68*****877.9*********8.....336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-122979IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-303089IPR001471AP2/ERF domain
SMARTSM003803.9E-253093IPR001471AP2/ERF domain
PROSITE profilePS5103222.1683087IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-203089IPR016177DNA-binding domain
PRINTSPR003671.3E-73142IPR001471AP2/ERF domain
CDDcd000184.44E-273189No hitNo description
PRINTSPR003671.3E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDNNDEVILA ETRPKKRAGR IVFKETRHPV YRGIRRRNGD KWVCEIREPT HQRRIWLGTY  60
PTAEMAARAH DVAAYALRGR SACLNFADSA WRLPVPESID PDVIRRVAAD AAEMFRPSEF  120
DSGITVLPSY SSNEVYLGSG SRSGWEERNM YGYVEEEEVS TTMMRLASEP LMSPPRSYVE  180
GEGMTTSNVY MGEEMCYEDT SLWSYSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-151786371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02733.1_g00005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0135940.0KJ013594.1 Brassica rapa subsp. chinensis CBF6A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435225.11e-152PREDICTED: dehydration-responsive element-binding protein 1F-like
RefseqXP_018435231.11e-152PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN861e-107DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A078GMZ31e-135A0A078GMZ3_BRANA; BnaA09g47030D protein
TrEMBLA0A3P5Y8Y21e-135A0A3P5Y8Y2_BRACM; Uncharacterized protein
TrEMBLM4EDV31e-135M4EDV3_BRARP; Uncharacterized protein
TrEMBLW8Q8V41e-135W8Q8V4_BRARC; CBF6A
STRINGBra026963.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-110ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]